Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_905

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_904: 9272 - K04705 STAM signal transducing adaptor molecule, at 2158067 to 2161022 9272 mRNA_905: 9273 - KOG4711 Predicted membrane protein, at 2161291 to 2166616 9273 mRNA_906: 9274 - K15791 DHKTD1 probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, at 2166702 to 2170290 9274

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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2,160,416 - 9272 mRNA_904 0.79 -1.9
2,160,729 + 0.3
2,161,026 - 1.0
2,161,157 - 0.1
2,161,163 + 0.5
2,161,186 + 2.2
2,161,211 - 1.8
2,161,302 - 1.9
2,161,323 - -0.6
2,161,324 + 0.2
2,161,327 - -0.2
2,161,337 - 0.5
2,161,358 - -2.5
2,161,364 + -0.0
2,161,370 + -1.2
2,161,473 - 2.2
2,161,578 + 0.7
2,161,607 - -1.0
2,161,638 + 3.1
2,161,828 - 9273 mRNA_905 0.10 2.4
2,162,205 + 9273 mRNA_905 0.17 2.3
2,162,229 - 9273 mRNA_905 0.18 -2.1
2,162,321 + 9273 mRNA_905 0.19 -2.4
2,162,470 - 9273 mRNA_905 0.22 -0.5
2,162,517 - 9273 mRNA_905 0.23 -0.7
2,162,642 - 9273 mRNA_905 0.25 0.3
2,162,766 - 9273 mRNA_905 0.28 2.1
2,162,767 + 9273 mRNA_905 0.28 3.7
2,162,786 + 9273 mRNA_905 0.28 0.8
2,162,928 - 9273 mRNA_905 0.31 0.1
2,162,980 - 9273 mRNA_905 0.32 3.6
2,163,262 + 9273 mRNA_905 0.37 -1.4
2,163,278 + 9273 mRNA_905 0.37 4.7
2,163,282 + 9273 mRNA_905 0.37 1.5
2,163,338 - 9273 mRNA_905 0.38 0.4
2,163,344 - 9273 mRNA_905 0.39 -1.0
2,163,532 + 9273 mRNA_905 0.42 0.2
2,163,536 - 9273 mRNA_905 0.42 0.6
2,163,538 - 9273 mRNA_905 0.42 0.3
2,163,557 - 9273 mRNA_905 0.43 2.1
2,163,558 + 9273 mRNA_905 0.43 2.5
2,163,575 + 9273 mRNA_905 0.43 -0.1
2,163,600 + 9273 mRNA_905 0.43 0.4
2,163,605 + 9273 mRNA_905 0.43 -0.3
2,163,662 + 9273 mRNA_905 0.45 -1.0
2,163,677 - 9273 mRNA_905 0.45 0.2
2,163,728 + 9273 mRNA_905 0.46 0.3
2,163,734 - 9273 mRNA_905 0.46 0.4
2,163,801 + 9273 mRNA_905 0.47 0.6
2,163,805 - 9273 mRNA_905 0.47 -0.5
2,163,868 - 9273 mRNA_905 0.48 0.0
2,163,890 + 9273 mRNA_905 0.49 1.9
2,164,113 - 9273 mRNA_905 0.53 1.0
2,164,192 + 9273 mRNA_905 0.54 0.5
2,164,303 + 9273 mRNA_905 0.57 -0.3
2,164,579 - 9273 mRNA_905 0.62 -1.0
2,164,628 - 9273 mRNA_905 0.63 0.2
2,164,755 + 9273 mRNA_905 0.65 -0.1
2,164,865 - 9273 mRNA_905 0.67 0.4
2,164,977 + 9273 mRNA_905 0.69 2.5
2,165,263 - 9273 mRNA_905 0.75 3.3
2,165,631 + 9273 mRNA_905 0.81 1.1
2,165,634 - 9273 mRNA_905 0.82 -2.4
2,165,867 - 9273 mRNA_905 0.86 0.5
2,166,065 - 9273 mRNA_905 0.90 0.2
2,166,076 - 9273 mRNA_905 0.90 -0.6
2,166,091 - 1.6
2,166,101 + -0.5
2,166,195 - -0.3
2,166,201 + 0.4
2,166,531 - 1.9
2,166,534 + 1.4
2,166,615 + 0.4
2,166,649 - 0.4
2,166,809 + -0.2
2,166,823 + 0.7
2,166,955 - -0.7
2,167,006 + -1.4
2,167,132 - 9274 mRNA_906 0.12 0.3
2,167,238 - 9274 mRNA_906 0.15 1.3
2,167,294 + 9274 mRNA_906 0.16 0.2
2,167,471 - 9274 mRNA_906 0.21 0.7
2,167,573 - 9274 mRNA_906 0.24 0.5
2,167,604 + 9274 mRNA_906 0.25 1.9