Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_902

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2149228 to 2151284 9269 mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2151634 to 2155672 9270 mRNA_903: 9271 - Hypothetical Protein, at 2155958 to 2156725 9271

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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2,150,894 + 9269 mRNA_901 0.81 0.1
2,151,015 - 9269 mRNA_901 0.87 1.6
2,151,022 - 9269 mRNA_901 0.87 0.0
2,151,040 - 9269 mRNA_901 0.88 2.0
2,151,079 - -0.3
2,151,331 - 0.3
2,151,345 + -0.4
2,151,356 - 0.1
2,151,374 - 0.0
2,151,404 - 1.8
2,151,415 + 1.2
2,151,445 - -2.2
2,151,525 + 0.0
2,151,620 - 0.5
2,151,627 + 0.6
2,151,799 - -0.3
2,151,811 + -1.2
2,151,812 + -0.4
2,151,857 + -0.1
2,151,978 - 0.6
2,152,007 - 1.8
2,152,081 + 9270 mRNA_902 0.11 -1.4
2,152,395 - 9270 mRNA_902 0.19 0.1
2,152,404 - 9270 mRNA_902 0.19 -0.6
2,152,715 + 9270 mRNA_902 0.27 0.4
2,152,735 - 9270 mRNA_902 0.27 -3.0
2,153,718 - 9270 mRNA_902 0.52 1.4
2,153,922 - 9270 mRNA_902 0.57 -3.2
2,155,485 + 1.5
2,155,681 - -1.1
2,155,769 - 1.3
2,155,914 + 0.0
2,156,047 - 9271 mRNA_903 0.12 0.7
2,156,089 + 9271 mRNA_903 0.17 -0.7
2,156,117 + 9271 mRNA_903 0.21 -0.8
2,156,356 - 9271 mRNA_903 0.52 2.1
2,156,375 + 9271 mRNA_903 0.54 0.5