Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_878

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_877: 9245 - K07425 CYP4A alkane 1-monooxygenase, at 2092667 to 2095053 9245 mRNA_878: 9246 - K14692 SLC30A5_7, ZNT5_7, MTP, MSC2 solute carrier family 30 (zinc transporter), member 5/7, at 2095411 to 2098626 9246

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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2,094,626 - 9245 mRNA_877 0.82 0.5
2,094,771 - 9245 mRNA_877 0.88 -0.2
2,095,005 + 1.5
2,095,042 + 1.6
2,095,197 + 2.3
2,095,329 + 1.5
2,095,329 + 0.8
2,095,330 + 0.8
2,095,364 + -3.5
2,095,490 - 0.3
2,095,493 + -0.2
2,095,497 + -0.1
2,095,503 - 1.5
2,095,634 + 1.6
2,095,774 - 9246 mRNA_878 0.11 -0.4
2,095,774 - 9246 mRNA_878 0.11 0.0
2,096,219 - 9246 mRNA_878 0.25 0.7
2,096,221 + 9246 mRNA_878 0.25 3.1
2,096,541 + 9246 mRNA_878 0.35 0.1
2,096,855 - 9246 mRNA_878 0.45 2.2
2,096,927 - 9246 mRNA_878 0.47 3.8
2,096,953 + 9246 mRNA_878 0.48 0.1
2,096,982 + 9246 mRNA_878 0.49 -1.8
2,096,988 - 9246 mRNA_878 0.49 0.5
2,097,146 - 9246 mRNA_878 0.54 -0.4
2,097,421 + 9246 mRNA_878 0.62 0.7
2,097,705 - 9246 mRNA_878 0.71 -0.5
2,097,841 + 9246 mRNA_878 0.76 -0.5
2,097,861 + 9246 mRNA_878 0.76 -0.8
2,097,994 + 9246 mRNA_878 0.80 -0.4
2,098,435 + -0.2
2,098,451 + 3.0
2,098,453 - -0.7
2,098,478 + 1.6
2,098,555 + -0.1
2,098,562 - -0.7
2,098,578 - 1.1
2,098,602 + 0.9
2,098,604 - -1.2
2,098,607 + 1.3
2,098,619 + 0.9
2,098,674 - 0.2
2,098,677 + -1.5
2,098,694 + -1.6
2,098,702 - 2.0
2,098,703 + 1.4
2,098,711 + 1.1
2,098,715 + 1.5
2,098,721 - -0.2
2,098,734 + 1.0
2,098,734 - 1.2
2,098,734 - -1.2
2,098,735 + -0.0
2,098,735 + 0.5
2,098,737 - 0.0
2,098,738 - -0.4
2,098,741 + -0.1
2,098,741 + -0.1
2,098,743 - 1.0
2,098,746 - 1.3
2,098,747 + 2.0
2,098,754 + -1.1
2,098,759 - -1.4
2,098,759 - -0.8
2,098,759 - -0.3
2,098,759 + -0.3
2,098,761 - -0.2
2,098,762 + 2.6
2,098,762 + 1.3
2,098,763 - 2.0
2,098,766 + 0.9
2,098,769 - 0.3
2,098,769 - -1.0
2,098,776 - 0.5
2,098,778 - 0.7
2,098,782 - 0.6
2,098,784 + 1.5
2,098,793 + 1.3
2,098,801 - -0.8
2,098,802 + 0.3
2,098,803 - 1.0
2,098,805 - 3.3
2,098,809 - 1.0
2,098,811 + 2.0
2,098,813 + 0.4
2,098,818 - -2.7
2,098,819 + 0.4
2,098,822 - 1.1
2,098,822 - 0.4
2,098,824 + 1.1
2,098,824 - 0.4
2,098,824 - 0.5
2,098,828 - -1.0
2,098,830 + -0.7
2,098,831 - -0.1
2,098,831 - 1.2
2,098,832 + -0.2
2,098,833 - 0.1
2,098,854 - 1.9
2,098,859 + 1.1
2,098,862 + 1.8
2,098,899 - -1.5
2,098,900 - 0.6
2,098,903 + -0.3
2,098,904 - 1.0
2,098,908 + 1.5
2,099,023 - -0.2
2,099,028 - 0.5
2,099,030 + 2.5
2,099,035 + -0.4
2,099,041 - -0.4
2,099,042 + -1.1
2,099,042 + 0.1
2,099,042 - 0.7
2,099,045 - 1.0
2,099,048 - 0.2
2,099,049 + -0.6
2,099,055 + -1.0
2,099,059 + -0.2
2,099,064 - 0.3
2,099,064 - 0.9
2,099,067 + -0.1
2,099,070 - 0.5
2,099,089 - 0.4
2,099,114 - -1.5
2,099,116 - 0.9
2,099,127 + 1.2
2,099,129 - -0.1
2,099,146 - 1.7
2,099,156 + 2.1
2,099,159 - 1.8
2,099,165 - 0.3
2,099,169 - -0.3
2,099,171 - 0.9
2,099,171 - 0.7
2,099,177 - -0.4
2,099,178 - -2.0
2,099,189 + 1.0
2,099,193 + -0.6
2,099,207 - -1.4
2,099,218 + 2.6
2,099,219 - 0.3
2,099,220 + -1.2
2,099,222 - -0.6
2,099,225 + -0.1
2,099,235 - 0.4
2,099,237 + -0.1
2,099,243 - 0.4
2,099,244 + 0.7
2,099,247 + -0.6
2,099,249 + 1.4
2,099,294 - 0.6
2,099,305 - 0.5
2,099,308 + 1.8
2,099,309 + 2.3
2,099,314 - 0.2
2,099,332 + 0.3
2,099,332 - 2.4
2,099,351 - -0.2
2,099,356 + 1.8
2,099,365 + 2.9
2,099,380 - 0.0
2,099,380 - -0.1
2,099,382 - 0.6
2,099,384 - -0.4
2,099,385 + 0.4
2,099,387 + 0.5
2,099,389 - -2.3
2,099,392 - 0.4
2,099,392 + 0.1
2,099,396 + 0.2
2,099,398 + 1.0
2,099,404 - 0.8
2,099,405 + -1.1
2,099,413 - -0.9
2,099,417 + 2.6
2,099,418 + 3.1
2,099,420 - 2.2
2,099,425 - 0.5
2,099,426 + -0.3
2,099,428 + -0.2
2,099,432 + 0.1
2,099,435 - 0.7
2,099,440 - 0.0
2,099,441 - 1.0
2,099,441 - 1.0
2,099,446 - 0.2
2,099,449 + -1.0
2,099,461 - 2.7
2,099,466 - 0.0
2,099,472 + -0.7
2,099,484 - 2.0
2,099,486 + 0.0
2,099,487 + 3.4
2,099,488 - 0.3
2,099,489 + -0.1
2,099,520 + 0.2
2,099,532 - 1.0
2,099,545 + 0.8
2,099,555 - 0.1
2,099,563 - -1.8
2,099,565 + -1.4
2,099,566 + -1.0
2,099,566 - 1.5
2,099,571 - 0.5
2,099,574 + 0.6
2,099,575 - 0.2
2,099,575 + 0.1
2,099,576 - -0.6
2,099,580 + -0.0
2,099,582 + 0.5
2,099,584 + 0.1
2,099,587 - 0.2
2,099,598 - 0.7
2,099,599 - -0.0
2,099,600 + 0.5
2,099,603 - -1.1
2,099,612 - 1.0
2,099,613 + 2.0
2,099,620 - 0.7
2,099,621 - 1.1
2,099,622 + 2.4