Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_858

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_857: 9225 - K14565 NOP58 nucleolar protein 58, at 2053274 to 2055374 9225 mRNA_858: 9226 - K10599 PRPF19, PRP19 pre-mRNA-processing factor 19, at 2055879 to 2057799 9226 mRNA_859: 9227 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 2057980 to 2061220 9227

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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2,055,569 + -1.0
2,055,579 - 1.1
2,055,616 - 0.9
2,055,684 - 0.3
2,055,696 - 0.9
2,055,698 + 1.9
2,055,700 + -1.4
2,055,702 + -2.5
2,055,814 + 3.1
2,055,830 + 1.3
2,057,014 - 9226 mRNA_858 0.59 2.0
2,057,729 + -0.9
2,057,825 - 0.7
2,057,879 - 0.5
2,057,898 - -1.3
2,057,902 + 1.9
2,057,905 - -0.4
2,057,912 - 0.0
2,058,032 + 3.3
2,058,043 - 0.1
2,058,048 - 2.5
2,058,064 + 1.8
2,058,105 - -1.2
2,058,507 - 9227 mRNA_859 0.16 -1.2