Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_816

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_815: 9183 - K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2, at 1941867 to 1942865 9183 mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1943601 to 1948343 9184 mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1948708 to 1950488 9185

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,943,087 + 0.2
1,943,089 + 1.2
1,943,394 - -0.2
1,943,397 + 0.5
1,943,530 - -0.7
1,943,540 - 0.2
1,943,687 - 0.6
1,943,812 - -0.2
1,943,813 - -0.1
1,943,826 - 0.4
1,943,835 + 0.2
1,943,846 + 0.3
1,943,956 + -0.6
1,944,413 - 9184 mRNA_816 0.17 1.3
1,944,439 + 9184 mRNA_816 0.18 0.9
1,944,524 + 9184 mRNA_816 0.19 -0.8
1,944,561 - 9184 mRNA_816 0.20 -1.8
1,944,842 - 9184 mRNA_816 0.26 -0.0
1,945,147 + 9184 mRNA_816 0.33 0.7
1,945,281 - 9184 mRNA_816 0.35 0.6
1,945,373 - 9184 mRNA_816 0.37 0.3
1,945,730 - 9184 mRNA_816 0.45 -0.9
1,945,884 + 9184 mRNA_816 0.48 1.2
1,946,056 + 9184 mRNA_816 0.52 1.4
1,946,207 - 9184 mRNA_816 0.55 0.4
1,946,270 + 9184 mRNA_816 0.56 0.3
1,946,431 + 9184 mRNA_816 0.60 -1.3
1,946,756 - 9184 mRNA_816 0.67 -0.2
1,946,837 - 9184 mRNA_816 0.68 -1.8
1,946,890 + 9184 mRNA_816 0.69 -0.1
1,947,058 + 9184 mRNA_816 0.73 1.5
1,947,193 - 9184 mRNA_816 0.76 -0.2
1,947,355 + 9184 mRNA_816 0.79 1.4
1,947,373 - 9184 mRNA_816 0.80 0.1
1,947,651 - 9184 mRNA_816 0.85 2.1
1,947,803 + 9184 mRNA_816 0.89 -0.0
1,948,188 - -0.5
1,948,288 - 0.6
1,948,292 - -0.5
1,948,550 - 2.7
1,948,565 - -0.4
1,948,706 + 1.5
1,949,025 + 9185 mRNA_817 0.18 -0.3