Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_796

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_795: 9163 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1891240 to 1893546 9163 mRNA_796: 9164 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1893932 to 1897116 9164 mRNA_797: 9165 - K02265 COX5B cytochrome c oxidase subunit 5b, at 1897731 to 1898518 9165

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,893,133 - 9163 mRNA_795 0.82 0.0
1,893,153 + 9163 mRNA_795 0.83 1.3
1,893,280 + 9163 mRNA_795 0.88 -0.2
1,893,292 + 9163 mRNA_795 0.89 0.0
1,893,444 - 1.2
1,893,449 + -0.5
1,893,465 + -0.4
1,893,476 - 1.6
1,893,477 + 1.8
1,893,573 + 1.6
1,893,576 + 1.0
1,893,576 - -0.4
1,893,576 - 2.0
1,893,592 + -0.1
1,893,593 - 2.3
1,893,594 - -0.1
1,893,605 + -0.1
1,893,606 - -0.2
1,893,651 + 0.6
1,893,662 - 0.1
1,893,666 - 1.5
1,893,671 - -0.0
1,893,694 - -0.6
1,893,709 - 0.1
1,893,724 + 1.1
1,893,726 - 1.2
1,893,735 + 2.1
1,893,739 - 0.7
1,893,745 + -2.2
1,893,748 + 0.8
1,893,750 + 2.5
1,893,757 - 0.1
1,893,758 + 1.9
1,893,761 + 0.8
1,893,763 - 0.3
1,893,764 + -0.0
1,893,765 + 0.8
1,893,765 - 0.6
1,893,773 - 0.4
1,893,780 + -0.3
1,893,784 - -0.8
1,893,810 + -1.4
1,893,873 + 1.3
1,893,889 + 2.8
1,893,890 - 0.2
1,893,892 - -0.4
1,893,917 + 0.1
1,893,919 + 1.2
1,893,920 + 0.1
1,893,926 - 0.9
1,893,942 + -0.2
1,893,954 + 0.3
1,894,005 + -2.5
1,894,043 + -0.7
1,894,055 + -0.1
1,894,083 + -1.6
1,894,091 + 1.1
1,894,205 - -0.2
1,894,252 + 9164 mRNA_796 0.10 -0.5
1,894,479 - 9164 mRNA_796 0.17 -1.0
1,894,502 - 9164 mRNA_796 0.18 0.6
1,894,970 - 9164 mRNA_796 0.33 1.7
1,895,258 + 9164 mRNA_796 0.42 -0.3
1,895,815 + 9164 mRNA_796 0.59 0.8
1,895,817 + 9164 mRNA_796 0.59 2.1
1,896,722 - 9164 mRNA_796 0.88 -1.5
1,896,830 - 0.4
1,897,130 - 2.1
1,897,132 + 1.7
1,897,160 + 0.3
1,897,265 - 2.2
1,897,292 - 1.7
1,897,404 + -0.1
1,897,405 - 0.5
1,897,416 + 2.2
1,897,427 + -2.4
1,897,432 + 1.0
1,897,436 + 0.4
1,897,437 - 1.0
1,897,445 - 0.7
1,897,448 - -1.5
1,897,465 + -0.0
1,897,495 - 0.6
1,897,588 + -0.4
1,897,596 + 1.1