Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_786

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_785: 9153 - K07305 msrB peptide-methionine (R)-S-oxide reductase, at 1868475 to 1869401 9153 mRNA_786: 9154 - Hypothetical Protein, at 1869517 to 1870125 9154 mRNA_787: 9155 - K17804 TIM44 mitochondrial import inner membrane translocase subunit TIM44, at 1870363 to 1872119 9155

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,868,740 + 9153 mRNA_785 0.29 1.6
1,869,130 - 9153 mRNA_785 0.71 0.1
1,869,130 - 9153 mRNA_785 0.71 -0.5
1,869,137 + 9153 mRNA_785 0.71 -1.4
1,869,148 + 9153 mRNA_785 0.73 0.4
1,869,149 + 9153 mRNA_785 0.73 -0.4
1,869,157 + 9153 mRNA_785 0.74 0.4
1,869,314 - 3.2
1,869,325 + 0.6
1,869,429 + 0.8
1,869,434 - -0.7
1,869,452 - 1.5
1,869,574 - 2.3
1,869,720 + 9154 mRNA_786 0.33 0.1
1,869,742 + 9154 mRNA_786 0.37 2.1
1,869,780 + 9154 mRNA_786 0.43 0.4
1,869,835 + 9154 mRNA_786 0.52 2.1
1,869,882 - 9154 mRNA_786 0.60 0.7
1,870,001 - 9154 mRNA_786 0.79 1.6
1,870,165 - -0.4
1,870,166 + 0.2
1,870,307 - -0.2
1,870,314 + 0.1
1,870,319 - -0.4
1,870,321 + -0.4
1,870,322 + 0.8
1,870,329 + 1.9