Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_732

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1743450 to 1746549 9099 mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1746932 to 1748724 9100 mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1748767 to 1750473 9101

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,746,009 + 9099 mRNA_731 0.83 0.5
1,746,291 + 1.0
1,746,301 - 0.4
1,746,311 - 0.8
1,746,396 - 1.2
1,746,397 + 0.7
1,746,431 - 0.1
1,746,439 + 0.2
1,746,464 - -1.1
1,746,573 - -0.6
1,746,582 - 0.3
1,746,600 - -0.2
1,746,601 - 1.3
1,746,605 - 0.1
1,746,610 + -0.3
1,746,737 + 3.4
1,746,748 - 1.1
1,746,756 + 0.7
1,746,874 - 0.4
1,746,876 - 1.0
1,746,940 + 0.3
1,746,945 - 1.7
1,746,992 - 0.5
1,747,005 + 0.0
1,747,051 + -0.0
1,747,421 + 9100 mRNA_732 0.27 0.3
1,747,645 - 9100 mRNA_732 0.40 2.1
1,747,765 - 9100 mRNA_732 0.46 0.5
1,748,049 - 9100 mRNA_732 0.62 1.2
1,748,114 - 9100 mRNA_732 0.66 -1.2
1,748,120 - 9100 mRNA_732 0.66 0.7
1,748,126 + 9100 mRNA_732 0.67 -1.0
1,748,328 + 9100 mRNA_732 0.78 0.0
1,748,383 - 9100 mRNA_732 0.81 2.6
1,748,385 - 9100 mRNA_732 0.81 1.8
1,748,407 + 9100 mRNA_732 0.82 0.5
1,748,481 - 9100 mRNA_732 0.86 0.6
1,748,494 + 9100 mRNA_732 0.87 0.1
1,748,520 - 9100 mRNA_732 0.89 1.3
1,748,657 + -2.0
1,748,664 - 0.9
1,748,697 + 0.7
1,748,718 - 2.9
1,748,816 - -0.5
1,748,843 + -1.4
1,748,846 - 1.0
1,748,945 + 9101 mRNA_733 0.10 1.0
1,749,173 - 9101 mRNA_733 0.24 0.7
1,749,245 + 9101 mRNA_733 0.28 -0.3
1,749,264 - 9101 mRNA_733 0.29 1.0
1,749,276 - 9101 mRNA_733 0.30 0.4
1,749,314 - 9101 mRNA_733 0.32 0.4
1,749,377 + 9101 mRNA_733 0.36 -0.5
1,749,389 + 9101 mRNA_733 0.36 0.3
1,749,554 + 9101 mRNA_733 0.46 1.1
1,749,554 + 9101 mRNA_733 0.46 4.0
1,749,624 + 9101 mRNA_733 0.50 -0.8
1,749,678 - 9101 mRNA_733 0.53 -1.6
1,749,702 - 9101 mRNA_733 0.55 -0.2