Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_729

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_728: 9096 - K18669 DYRK2_3_4 dual specificity tyrosine-phosphorylation-regulated kinase 2/3/4, at 1731599 to 1733273 9096 mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1733800 to 1738518 9097 mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1738976 to 1743135 9098

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,732,832 + 9096 mRNA_728 0.74 0.4
1,732,894 - 9096 mRNA_728 0.77 0.1
1,733,126 - 0.3
1,733,143 - -0.1
1,733,201 - 2.1
1,733,203 + 0.5
1,733,242 - 0.7
1,733,253 + 0.0
1,733,465 + 0.3
1,733,573 + 0.6
1,733,622 - 0.3
1,733,872 + -0.7
1,734,220 - 1.2
1,735,208 - 9097 mRNA_729 0.30 2.7
1,735,311 - 9097 mRNA_729 0.32 1.1
1,735,447 - 9097 mRNA_729 0.35 -1.2
1,735,497 + 9097 mRNA_729 0.36 2.0
1,735,637 - 9097 mRNA_729 0.39 -0.2
1,735,746 + 9097 mRNA_729 0.41 -2.0
1,735,874 - 9097 mRNA_729 0.44 1.3
1,736,128 + 9097 mRNA_729 0.49 1.1
1,736,834 + 9097 mRNA_729 0.64 0.6
1,736,947 - 9097 mRNA_729 0.67 2.5
1,736,985 + 9097 mRNA_729 0.67 -1.3
1,737,264 - 9097 mRNA_729 0.73 -0.3
1,737,337 - 9097 mRNA_729 0.75 0.3
1,737,403 + 9097 mRNA_729 0.76 -0.9
1,737,702 + 9097 mRNA_729 0.83 0.1
1,737,998 + 9097 mRNA_729 0.89 0.4
1,738,082 - -1.1
1,738,104 + -0.2
1,738,244 - -1.0
1,738,272 - 0.3
1,738,412 - 0.9
1,738,432 + 0.6
1,738,432 - -0.3
1,738,581 + 3.3
1,738,592 + 2.4
1,738,720 + 1.1
1,738,733 + 1.5
1,738,737 - 1.0
1,738,738 - 0.1
1,738,738 - 1.2
1,738,741 + 0.9
1,738,746 + 2.2
1,738,852 - 1.6
1,738,856 + 0.2
1,738,870 - 1.0
1,739,190 - -1.2
1,739,199 + 0.3
1,739,494 + 9098 mRNA_730 0.12 1.6