Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_691

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_690: 9058 - HMMPfam-Tat binding protein 1(TBP-1)-interacting protein (TBPIP)-PF07106, at 1652367 to 1653596 9058 mRNA_691: 9059 - BLAST gliotoxin biosynthesis protein GliK [Marssonina b..., at 1654187 to 1655230 9059 mRNA_692: 9060 - K04459 DUSP, MKP dual specificity MAP kinase phosphatase, at 1655871 to 1659034 9060

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,653,959 - -1.2
1,653,959 + -0.2
1,654,070 - 1.5
1,654,098 + -0.9
1,654,100 - -1.7
1,654,105 + 0.1
1,654,116 + -0.3
1,654,122 - 2.1
1,654,127 - 0.0
1,654,154 - 1.0
1,654,260 + 0.6
1,654,407 + 9059 mRNA_691 0.21 2.0
1,654,408 - 9059 mRNA_691 0.21 0.4
1,654,414 - 9059 mRNA_691 0.22 -1.2
1,654,578 - 9059 mRNA_691 0.37 1.7
1,654,581 + 9059 mRNA_691 0.38 0.1
1,654,713 - 9059 mRNA_691 0.50 0.7
1,654,739 - 9059 mRNA_691 0.53 0.8
1,655,038 + 9059 mRNA_691 0.82 1.1
1,655,039 + 9059 mRNA_691 0.82 1.2
1,655,451 - 3.5
1,655,475 + 0.1
1,655,475 + 2.6
1,655,507 + -0.4
1,655,522 - 2.2
1,655,640 + 0.8
1,655,646 - -0.1
1,655,779 - 2.5
1,655,791 - 0.5
1,655,811 + 0.7
1,655,937 - 0.4
1,655,982 - 2.0
1,656,123 + -0.5