Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_684

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_683: 9051 - K01613 psd, PISD phosphatidylserine decarboxylase, at 1638810 to 1640262 9051 mRNA_684: 9052 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1640420 to 1643110 9052 mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1643444 to 1644500 9053

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,639,558 + 9051 mRNA_683 0.51 -1.2
1,639,562 - 9051 mRNA_683 0.52 0.1
1,639,803 - 9051 mRNA_683 0.68 -0.9
1,640,250 - -0.8
1,640,279 - 0.4
1,640,287 + 0.2
1,640,297 + -0.6
1,640,298 - 3.2
1,640,360 + 0.2
1,640,410 + 4.5
1,640,414 + -0.6
1,640,430 + -0.5
1,640,519 - 0.9
1,640,540 - 0.5
1,640,550 - -0.7
1,640,559 + 2.1
1,640,563 - -0.4
1,640,569 - 2.0
1,640,571 - 2.0
1,640,588 + 2.6
1,640,588 - 1.6
1,640,591 + -0.6
1,640,603 + 0.2
1,640,603 - 0.4
1,640,613 - 0.9
1,640,617 + -0.8
1,640,623 - -0.4
1,640,625 - -0.2
1,640,627 - 0.1
1,640,629 + -0.0
1,640,629 + -0.7
1,640,636 + -0.1
1,640,675 - 1.9
1,640,691 - 9052 mRNA_684 0.10 0.7
1,640,693 + 9052 mRNA_684 0.10 -2.0
1,640,695 - 9052 mRNA_684 0.10 1.5
1,640,696 - 9052 mRNA_684 0.10 0.9
1,640,701 - 9052 mRNA_684 0.10 2.0
1,640,703 - 9052 mRNA_684 0.11 -0.2
1,640,704 - 9052 mRNA_684 0.11 0.7
1,640,708 + 9052 mRNA_684 0.11 -0.1
1,640,746 - 9052 mRNA_684 0.12 -2.2
1,640,751 - 9052 mRNA_684 0.12 -0.3
1,640,754 + 9052 mRNA_684 0.12 0.9
1,640,757 + 9052 mRNA_684 0.13 0.5
1,640,766 + 9052 mRNA_684 0.13 -0.3
1,640,774 - 9052 mRNA_684 0.13 0.7
1,640,786 - 9052 mRNA_684 0.14 -0.7
1,640,808 + 9052 mRNA_684 0.14 2.3
1,640,827 + 9052 mRNA_684 0.15 0.6
1,640,834 - 9052 mRNA_684 0.15 0.8
1,640,838 - 9052 mRNA_684 0.16 -0.1
1,640,847 - 9052 mRNA_684 0.16 0.2
1,640,847 - 9052 mRNA_684 0.16 0.0
1,640,850 + 9052 mRNA_684 0.16 0.3
1,640,852 - 9052 mRNA_684 0.16 0.1
1,640,855 + 9052 mRNA_684 0.16 1.5
1,640,856 + 9052 mRNA_684 0.16 2.4
1,640,857 + 9052 mRNA_684 0.16 1.6
1,640,859 + 9052 mRNA_684 0.16 -0.1
1,640,860 + 9052 mRNA_684 0.16 -0.1
1,640,866 + 9052 mRNA_684 0.17 -0.2
1,640,872 + 9052 mRNA_684 0.17 0.2
1,640,874 + 9052 mRNA_684 0.17 0.5
1,640,875 + 9052 mRNA_684 0.17 -0.0
1,640,879 - 9052 mRNA_684 0.17 1.6
1,640,881 - 9052 mRNA_684 0.17 -0.2
1,641,037 + 9052 mRNA_684 0.23 0.2
1,641,167 - 9052 mRNA_684 0.28 0.1
1,641,308 + 9052 mRNA_684 0.33 0.8
1,641,478 - 9052 mRNA_684 0.39 0.4
1,641,564 + 9052 mRNA_684 0.43 1.6
1,641,583 + 9052 mRNA_684 0.43 -0.9
1,641,607 + 9052 mRNA_684 0.44 0.3
1,641,875 - 9052 mRNA_684 0.54 1.4
1,641,911 + 9052 mRNA_684 0.55 1.3
1,642,038 + 9052 mRNA_684 0.60 0.6
1,642,471 + 9052 mRNA_684 0.76 -0.5
1,642,562 - 9052 mRNA_684 0.80 0.4
1,642,604 - 9052 mRNA_684 0.81 2.3
1,642,988 - 1.5
1,643,048 + -1.0
1,643,185 - -1.5
1,643,293 - 0.6