Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_648

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_647: 9015 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1555645 to 1557271 9015 mRNA_648: 9016 - K03424 tatD TatD DNase family protein, at 1557558 to 1558767 9016 mRNA_649: 9017 - K15192 BTAF1, MOT1 TATA-binding protein-associated factor, at 1558936 to 1565576 9017

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,557,153 + 3.1
1,557,207 + -0.3
1,557,516 + 1.8
1,557,591 + -0.6
1,557,679 + 9016 mRNA_648 0.10 0.8
1,557,810 + 9016 mRNA_648 0.21 1.3
1,557,892 + 9016 mRNA_648 0.28 2.2
1,558,513 + 9016 mRNA_648 0.79 -0.7
1,558,515 - 9016 mRNA_648 0.79 -0.1
1,558,518 - 9016 mRNA_648 0.79 1.7
1,558,521 - 9016 mRNA_648 0.80 1.3
1,558,545 - 9016 mRNA_648 0.82 2.4
1,558,661 + 0.2
1,558,678 - 0.5
1,558,693 + -0.8
1,558,817 + 0.8
1,558,822 - 0.1
1,558,829 + -0.7
1,558,839 - -0.8