Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_647

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_646: 9014 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1552967 to 1555102 9014 mRNA_647: 9015 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 1555645 to 1557271 9015 mRNA_648: 9016 - K03424 tatD TatD DNase family protein, at 1557558 to 1558767 9016

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,555,229 - 0.7
1,555,249 - 1.4
1,555,251 + 2.1
1,555,359 - 0.2
1,555,532 - 1.9
1,555,931 + 9015 mRNA_647 0.18 0.3
1,555,998 - 9015 mRNA_647 0.22 -0.8
1,557,153 + 3.1
1,557,207 + -0.3
1,557,516 + 1.8
1,557,591 + -0.6
1,557,679 + 9016 mRNA_648 0.10 0.8
1,557,810 + 9016 mRNA_648 0.21 1.3
1,557,892 + 9016 mRNA_648 0.28 2.2