Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_628

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_629: 8997 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 1505525 to 1506625 8997 mRNA_628: 8996 - K17894 GATA2 GATA-binding protein 2, at 1506988 to 1510110 8996 mRNA_630: 8998 - K10088 OS9 protein OS-9, at 1511055 to 1513202 8998

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,506,647 + 3.2
1,506,668 + -1.4
1,506,669 + 1.4
1,506,809 - -2.4
1,506,966 + 2.2
1,507,158 + 0.2
1,507,255 - 0.8
1,507,995 + 8996 mRNA_628 0.32 0.6
1,508,446 - 8996 mRNA_628 0.47 0.2
1,508,449 + 8996 mRNA_628 0.47 0.3
1,508,574 - 8996 mRNA_628 0.51 1.7
1,508,750 + 8996 mRNA_628 0.56 1.5
1,509,593 - 8996 mRNA_628 0.83 0.1
1,509,608 - 8996 mRNA_628 0.84 0.1
1,509,740 - 8996 mRNA_628 0.88 0.8
1,509,744 - 8996 mRNA_628 0.88 -0.1
1,509,862 - -0.1
1,509,899 + 0.1
1,510,055 - -0.0
1,510,065 - -0.8
1,510,073 + 0.3
1,510,197 - -0.4
1,510,200 - -0.7
1,510,314 + -0.1
1,510,354 - 0.1
1,510,366 + -1.9
1,510,394 - -0.1
1,510,495 - 0.3
1,510,496 - -0.2
1,510,500 - 1.7
1,510,522 - 1.6
1,510,524 - -1.5
1,510,528 - 0.2
1,510,531 + 0.4
1,510,537 + -0.1
1,510,644 + 1.5
1,510,690 - 0.2
1,510,694 - -1.4
1,510,728 + -1.8
1,510,734 + 0.8
1,510,738 - 0.2
1,510,812 - -1.9
1,510,824 - 0.0
1,510,888 - 0.0
1,510,893 + 0.7
1,510,896 - 0.2
1,510,901 + 0.2
1,510,911 + -1.1
1,510,915 - -0.1
1,510,916 + 0.2
1,510,921 + 1.0
1,510,927 + -0.1
1,510,935 - 1.1
1,510,972 - 0.8
1,511,054 - -1.3