Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_609

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_608: 8976 - K09490 HSPA5, BIP heat shock 70kDa protein 5, at 1462266 to 1464196 8976 mRNA_609: 8977 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 1464752 to 1468761 8977 mRNA_610: 8978 - K06961 KRR1 ribosomal RNA assembly protein, at 1469039 to 1470636 8978

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,464,660 + 1.0
1,464,661 - 2.4
1,464,675 - 0.4
1,464,688 - 2.2
1,464,713 + 0.2
1,464,723 + 0.9
1,464,833 - -0.2
1,464,840 + 2.1
1,464,856 + 1.2
1,464,985 + -0.0
1,464,988 + 0.6
1,465,289 + 8977 mRNA_609 0.13 2.9
1,465,587 + 8977 mRNA_609 0.21 0.6
1,465,733 - 8977 mRNA_609 0.24 0.4
1,465,844 - 8977 mRNA_609 0.27 1.5
1,465,972 + 8977 mRNA_609 0.30 -0.9
1,466,585 - 8977 mRNA_609 0.46 -2.0
1,466,599 + 8977 mRNA_609 0.46 4.3
1,466,710 - 8977 mRNA_609 0.49 -0.5
1,466,728 + 8977 mRNA_609 0.49 -0.2
1,466,908 + 8977 mRNA_609 0.54 1.6
1,467,458 - 8977 mRNA_609 0.67 -0.3
1,467,765 - 8977 mRNA_609 0.75 0.1
1,467,900 + 8977 mRNA_609 0.79 -1.6
1,467,936 + 8977 mRNA_609 0.79 1.2
1,468,044 - 8977 mRNA_609 0.82 1.8
1,468,181 + 8977 mRNA_609 0.86 -0.2
1,468,356 - 8977 mRNA_609 0.90 2.7
1,468,610 - 0.1
1,468,634 + 0.1
1,468,634 - -0.1
1,468,654 + 1.5
1,468,727 - 0.3
1,468,764 + -0.4
1,468,791 + 0.4
1,468,794 + -1.2
1,468,799 + 3.6
1,468,922 - 0.7
1,468,932 - -0.4
1,468,941 - 0.6
1,468,943 + -0.8
1,468,948 + -0.4
1,468,957 - 0.9