Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_563

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1346639 to 1349486 8930 mRNA_563: 8931 - K05287 PIGF phosphatidylinositol glycan, class F, at 1349685 to 1350957 8931 mRNA_564: 8932 - K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase, at 1351046 to 1353534 8932

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,349,065 - 8930 mRNA_562 0.85 -1.1
1,349,337 - 0.4
1,349,618 - 0.5
1,349,623 - -0.5
1,349,628 - 1.8
1,349,642 - -0.2
1,349,658 + 0.2
1,350,225 - 8931 mRNA_563 0.42 1.8
1,350,536 - 8931 mRNA_563 0.67 0.9
1,350,710 + 8931 mRNA_563 0.81 0.6
1,350,819 + 8931 mRNA_563 0.89 0.7
1,351,372 + 8932 mRNA_564 0.13 3.1
1,351,677 - 8932 mRNA_564 0.25 -0.9
1,351,820 - 8932 mRNA_564 0.31 2.4
1,351,827 - 8932 mRNA_564 0.31 1.2
1,351,836 + 8932 mRNA_564 0.32 -0.2
1,351,837 + 8932 mRNA_564 0.32 -0.6
1,351,837 - 8932 mRNA_564 0.32 1.1