Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_469

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_468: 8836 - Hypothetical Protein, at 1086424 to 1087519 8836 mRNA_469: 8837 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1088366 to 1093699 8837 mRNA_470: 8838 - KOG0714 Molecular chaperone (DnaJ superfamily), at 1094157 to 1095851 8838

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,087,941 - 0.6
1,087,973 - 0.1
1,087,993 - 0.2
1,088,001 - -0.1
1,088,093 - 2.1
1,088,095 + -0.8
1,088,144 + -0.0
1,088,375 + -0.7
1,088,474 - -0.1
1,089,269 + 8837 mRNA_469 0.17 0.7
1,089,285 - 8837 mRNA_469 0.17 0.1
1,089,724 - 8837 mRNA_469 0.25 0.4
1,090,003 - 8837 mRNA_469 0.31 0.1
1,090,195 - 8837 mRNA_469 0.34 -0.8
1,090,851 - 8837 mRNA_469 0.47 0.6
1,091,292 + 8837 mRNA_469 0.55 -1.6
1,091,449 - 8837 mRNA_469 0.58 0.4
1,091,773 - 8837 mRNA_469 0.64 0.4
1,092,207 - 8837 mRNA_469 0.72 -0.8
1,092,554 - 8837 mRNA_469 0.79 -1.4
1,092,555 + 8837 mRNA_469 0.79 -0.5
1,093,329 + 0.3
1,093,369 - 1.0
1,093,637 - -0.9
1,093,704 + -0.6
1,093,745 + 1.3
1,093,764 - 1.9
1,093,919 - -1.2
1,093,923 - 0.3
1,093,923 + 0.1
1,093,924 - -0.2
1,093,932 + 2.1
1,093,940 - -1.1
1,094,079 + -2.8
1,094,091 - -0.1
1,094,095 + 0.1
1,094,219 - 1.2
1,094,236 + 0.3
1,094,238 - 0.4
1,094,243 - -2.3
1,094,253 + 0.4
1,094,398 - 8838 mRNA_470 0.14 0.9
1,094,415 + 8838 mRNA_470 0.15 1.4