Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_459

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_458: 8826 - KOG2676 Uncharacterized conserved protein, at 1066274 to 1068450 8826 mRNA_459: 8827 - K10598 PPIL2, CYC4, CHP60 peptidyl-prolyl cis-trans isomerase-like 2, at 1068531 to 1071036 8827 mRNA_460: 8828 - K15177 LEO1 RNA polymerase-associated protein LEO1, at 1071299 to 1073173 8828

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,068,590 - -0.9
1,068,598 + -1.2
1,068,927 - 8827 mRNA_459 0.16 0.4
1,069,149 + 8827 mRNA_459 0.25 0.9
1,069,284 + 8827 mRNA_459 0.30 -0.0
1,069,628 - 8827 mRNA_459 0.44 0.9
1,069,786 + 8827 mRNA_459 0.50 0.2
1,070,051 - 8827 mRNA_459 0.61 -0.5
1,070,065 - 8827 mRNA_459 0.61 1.9
1,070,100 + 8827 mRNA_459 0.63 -0.1
1,070,178 + 8827 mRNA_459 0.66 -1.1
1,070,237 + 8827 mRNA_459 0.68 0.3
1,070,359 - 8827 mRNA_459 0.73 0.6
1,070,657 - 8827 mRNA_459 0.85 2.4
1,070,762 - 8827 mRNA_459 0.89 1.0
1,070,799 + 2.0
1,071,079 - 0.7
1,071,089 - 2.5
1,071,251 + 0.9
1,071,263 - 0.3
1,071,402 - -0.7
1,071,655 - 8828 mRNA_460 0.19 0.2
1,071,659 - 8828 mRNA_460 0.19 -0.9
1,071,667 + 8828 mRNA_460 0.20 0.4