Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_441

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_440: 8808 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 1020213 to 1022062 8808 mRNA_441: 8809 - K13989 DERL2_3 Derlin-2/3, at 1022824 to 1024299 8809 mRNA_442: 8810 - K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15, at 1024579 to 1029147 8810

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,021,860 + 8808 mRNA_440 0.89 0.6
1,022,103 - 2.2
1,022,128 + -0.3
1,022,131 + -1.2
1,022,142 + 1.3
1,022,268 - 1.4
1,022,274 - 0.0
1,022,287 - -0.2
1,022,297 - 0.4
1,022,335 + 0.4
1,022,336 + 0.2
1,022,337 + -1.7
1,022,341 + 0.8
1,022,347 + 0.9
1,022,358 + 0.1
1,022,402 - 0.2
1,022,410 + -1.7
1,022,422 + -1.1
1,022,430 + 0.0
1,022,431 - -1.1
1,022,471 - 0.3
1,022,475 - 0.1
1,022,766 - 0.8
1,022,909 - 0.0
1,023,288 - 8809 mRNA_441 0.31 2.0
1,024,043 + 8809 mRNA_441 0.83 1.7
1,024,184 - 1.6
1,024,335 + 1.0
1,024,448 - 2.1
1,024,450 - 0.3
1,024,481 + 0.3
1,024,485 - 0.4
1,024,832 + 1.8
1,024,951 + 1.1