Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_424

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_423: 8791 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 985910 to 986810 8791 mRNA_424: 8792 - HMMPfam-Diaphanous GTPase-binding Domain-PF06371,SUPERFAMILY--SSF48371, at 987368 to 990699 8792 mRNA_425: 8793 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 991145 to 992451 8793

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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986,551 - 8791 mRNA_423 0.71 -0.1
986,663 - 8791 mRNA_423 0.84 1.2
986,698 - 8791 mRNA_423 0.87 4.5
986,935 - -0.3
986,945 - -2.3
986,956 + -0.3
986,964 + 0.5
986,989 - -0.8
987,122 - 1.2
987,132 - -1.0
987,154 + -0.3
987,189 - 1.1
987,290 + -0.2
987,306 - 0.5
987,335 + -0.4
987,381 - 0.7
987,442 + 1.7
987,563 - -2.2
987,717 - 8792 mRNA_424 0.10 0.2
987,728 - 8792 mRNA_424 0.11 0.8
987,749 - 8792 mRNA_424 0.11 3.8
988,307 + 8792 mRNA_424 0.28 0.1
988,497 - 8792 mRNA_424 0.34 3.1
988,535 - 8792 mRNA_424 0.35 2.0
988,633 + 8792 mRNA_424 0.38 1.7
988,935 - 8792 mRNA_424 0.47 0.2
989,211 + 8792 mRNA_424 0.55 0.8
989,308 + 8792 mRNA_424 0.58 1.3
989,375 - 8792 mRNA_424 0.60 0.7
989,667 - 8792 mRNA_424 0.69 -1.9
989,805 - 8792 mRNA_424 0.73 -0.2
990,071 + 8792 mRNA_424 0.81 0.7
990,163 + 8792 mRNA_424 0.84 1.6
990,201 + 8792 mRNA_424 0.85 0.8
990,342 - 8792 mRNA_424 0.89 1.9
990,635 + -0.2
990,768 - 0.8
991,085 - -1.2
991,134 - 0.9
991,212 - 2.0
991,236 + -0.0
991,475 - 8793 mRNA_425 0.25 -0.5
991,507 + 8793 mRNA_425 0.28 -0.1