Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_418

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976232 to 979073 8786 mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979163 to 981247 8787

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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975,325 + 0.0
975,337 - -1.4
975,466 + 0.1
975,624 - 1.6
975,886 - -0.8
975,907 - 0.1
975,908 - 0.4
975,909 - 2.1
975,911 + -2.0
975,915 + -1.8
975,941 + 2.7
976,045 - -0.7
976,062 - 0.3
976,070 + -1.0
976,190 - 0.9
976,190 + -1.0
976,338 + 2.1
976,342 + -0.2
976,342 - -0.3
976,343 - 0.2
976,347 - 0.1
976,483 - 0.5
976,796 + 8786 mRNA_418 0.20 -0.8
976,841 - 8786 mRNA_418 0.21 1.5
976,933 + 8786 mRNA_418 0.25 3.0
977,083 + 8786 mRNA_418 0.30 3.4
977,492 - 8786 mRNA_418 0.44 -0.2
977,519 - 8786 mRNA_418 0.45 -0.3
977,569 - 8786 mRNA_418 0.47 0.9
978,108 + 8786 mRNA_418 0.66 -1.2
978,189 + 8786 mRNA_418 0.69 0.5
978,226 + 8786 mRNA_418 0.70 0.3
978,300 - 8786 mRNA_418 0.73 -0.3
978,782 - 8786 mRNA_418 0.90 0.6
979,436 + 8787 mRNA_419 0.13 -1.7
979,436 + 8787 mRNA_419 0.13 -0.5
979,674 + 8787 mRNA_419 0.25 -0.1
979,717 - 8787 mRNA_419 0.27 0.9
979,853 + 8787 mRNA_419 0.33 0.5
980,002 + 8787 mRNA_419 0.40 0.2