Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_415

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_414: 8782 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 967662 to 968667 8782 mRNA_415: 8783 - K03511 POLK DNA polymerase kappa, at 969041 to 971775 8783 mRNA_416: 8784 - Hypothetical Protein, at 972046 to 973465 8784

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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968,435 - 8782 mRNA_414 0.77 -0.4
968,435 + 8782 mRNA_414 0.77 0.1
968,437 - 8782 mRNA_414 0.77 3.2
968,447 - 8782 mRNA_414 0.78 0.2
968,448 - 8782 mRNA_414 0.78 -0.1
968,455 + 8782 mRNA_414 0.79 -0.6
968,459 + 8782 mRNA_414 0.79 2.6
968,606 + 0.3
968,643 - 1.2
968,740 - 0.1
968,741 - -0.2
968,749 - 0.9
968,763 + 1.3
968,768 - 0.3
968,769 + 1.5
968,777 + 0.2
968,782 + -1.9
968,790 - 4.0
968,796 - -0.7
968,797 - -0.5
968,797 - 0.4
968,803 + -1.0
968,812 - 1.5
968,813 + -0.6
968,813 + -1.7
968,849 + -0.5
968,863 + 0.2
968,869 + 0.9
968,949 - -1.4
969,325 + 8783 mRNA_415 0.10 -0.2
969,524 - 8783 mRNA_415 0.18 0.5
969,536 + 8783 mRNA_415 0.18 0.3
969,676 + 8783 mRNA_415 0.23 0.2
969,796 + 8783 mRNA_415 0.28 1.3
969,970 - 8783 mRNA_415 0.34 -1.6
970,085 + 8783 mRNA_415 0.38 0.1
970,196 - 8783 mRNA_415 0.42 -0.3
970,209 - 8783 mRNA_415 0.43 -0.7
970,212 - 8783 mRNA_415 0.43 -0.4
970,222 - 8783 mRNA_415 0.43 0.2
970,932 + 8783 mRNA_415 0.69 0.2
970,933 - 8783 mRNA_415 0.69 0.9
971,085 - 8783 mRNA_415 0.75 1.4
971,231 + 8783 mRNA_415 0.80 0.2
971,406 + 8783 mRNA_415 0.86 1.0
971,520 - 1.0
971,676 - 0.9
971,794 + 2.4
971,807 - 0.3
971,959 - 0.4
971,972 - -2.0
971,990 - 0.7
972,009 + -0.9
972,230 + 8784 mRNA_416 0.13 1.6
972,248 - 8784 mRNA_416 0.14 1.5
972,292 + 8784 mRNA_416 0.17 0.5
972,396 - 8784 mRNA_416 0.25 -3.3
972,397 + 8784 mRNA_416 0.25 0.5