Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_401

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930496 to 933710 8768 mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934317 to 936010 8769 mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936053 to 937253 8770

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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933,604 - 0.5
933,650 - 3.4
934,046 - 0.5
934,195 + 1.9
934,239 - -0.4
934,255 + 1.2
934,364 - 2.8
934,374 + -1.3
934,380 - 0.3
934,384 + -1.4
934,502 - 8769 mRNA_401 0.11 0.2
934,530 + 8769 mRNA_401 0.13 0.7
934,539 - 8769 mRNA_401 0.13 -0.7
934,545 - 8769 mRNA_401 0.13 0.2
935,384 + 8769 mRNA_401 0.63 0.1
935,386 - 8769 mRNA_401 0.63 -1.1
935,797 - 8769 mRNA_401 0.87 0.0
935,835 + 8769 mRNA_401 0.90 0.6
935,932 + 0.0
935,956 - 1.8
935,995 - 0.8
936,009 - -0.0
936,011 + 0.8
936,017 - 3.5
936,018 + 1.0
936,047 + -1.8
936,055 + 1.2
936,083 - 1.6
936,084 + -0.9
936,091 - 0.3
936,091 - 1.3
936,092 + -0.6
936,101 + 1.0
936,103 - -0.4
936,106 - 0.6
936,111 + 1.2
936,122 - -0.4
936,123 - 2.0
936,130 - 2.3
936,134 - 0.9
936,135 - 0.9
936,138 + -0.1
936,138 + 1.3
936,152 - 2.4
936,195 + 8770 mRNA_402 0.12 -0.3
936,206 + 8770 mRNA_402 0.13 -0.2
936,209 - 8770 mRNA_402 0.13 0.4
936,211 + 8770 mRNA_402 0.13 -0.8
936,213 + 8770 mRNA_402 0.13 0.1
936,235 + 8770 mRNA_402 0.15 0.7
936,242 - 8770 mRNA_402 0.16 -0.8
936,254 - 8770 mRNA_402 0.17 0.3
936,254 - 8770 mRNA_402 0.17 -0.7
936,259 - 8770 mRNA_402 0.17 2.1
936,277 - 8770 mRNA_402 0.19 0.1
936,293 - 8770 mRNA_402 0.20 1.1
936,309 - 8770 mRNA_402 0.21 -0.3
936,310 + 8770 mRNA_402 0.21 -0.1
936,311 + 8770 mRNA_402 0.21 1.3
936,312 - 8770 mRNA_402 0.22 0.4
936,320 + 8770 mRNA_402 0.22 0.4
936,325 - 8770 mRNA_402 0.23 -0.4
936,330 - 8770 mRNA_402 0.23 0.5
936,331 - 8770 mRNA_402 0.23 0.0
936,332 - 8770 mRNA_402 0.23 -1.7
936,343 - 8770 mRNA_402 0.24 -1.3
936,349 - 8770 mRNA_402 0.25 3.5
936,368 + 8770 mRNA_402 0.26 -0.2
936,380 - 8770 mRNA_402 0.27 0.1
936,381 - 8770 mRNA_402 0.27 0.4
936,381 - 8770 mRNA_402 0.27 2.7
936,384 + 8770 mRNA_402 0.28 -0.3
936,385 + 8770 mRNA_402 0.28 -0.4
936,396 + 8770 mRNA_402 0.29 1.1
936,396 - 8770 mRNA_402 0.29 0.3
936,429 - 8770 mRNA_402 0.31 0.2
936,477 - 8770 mRNA_402 0.35 2.3
936,512 + 8770 mRNA_402 0.38 -0.5
936,539 + 8770 mRNA_402 0.40 1.4
936,542 + 8770 mRNA_402 0.41 -0.4
936,545 + 8770 mRNA_402 0.41 0.0
936,550 + 8770 mRNA_402 0.41 -0.3
936,567 - 8770 mRNA_402 0.43 0.4
936,578 + 8770 mRNA_402 0.44 1.6
936,615 + 8770 mRNA_402 0.47 -0.3
936,633 + 8770 mRNA_402 0.48 0.4
936,645 - 8770 mRNA_402 0.49 0.5
936,649 - 8770 mRNA_402 0.50 -1.1
936,652 - 8770 mRNA_402 0.50 1.6
936,664 + 8770 mRNA_402 0.51 0.2
936,664 + 8770 mRNA_402 0.51 0.4
936,669 + 8770 mRNA_402 0.51 -0.1
936,683 - 8770 mRNA_402 0.52 -0.3
936,683 - 8770 mRNA_402 0.52 0.4
936,703 - 8770 mRNA_402 0.54 0.1
936,712 - 8770 mRNA_402 0.55 3.1
936,743 - 8770 mRNA_402 0.57 -0.1
936,750 - 8770 mRNA_402 0.58 -0.7
936,750 - 8770 mRNA_402 0.58 1.0
936,772 + 8770 mRNA_402 0.60 4.1
936,774 - 8770 mRNA_402 0.60 0.6
936,775 + 8770 mRNA_402 0.60 -0.2
936,781 + 8770 mRNA_402 0.61 1.1
936,790 + 8770 mRNA_402 0.61 -1.2
936,791 - 8770 mRNA_402 0.61 -0.3
936,793 - 8770 mRNA_402 0.62 0.3
936,801 - 8770 mRNA_402 0.62 -0.6
936,809 - 8770 mRNA_402 0.63 0.7
936,813 - 8770 mRNA_402 0.63 -0.3
936,817 - 8770 mRNA_402 0.64 -0.4
936,827 - 8770 mRNA_402 0.64 1.4
936,829 + 8770 mRNA_402 0.65 0.1
936,830 - 8770 mRNA_402 0.65 -1.3
936,832 - 8770 mRNA_402 0.65 2.0
936,837 + 8770 mRNA_402 0.65 -2.1
936,887 - 8770 mRNA_402 0.69 -1.1