Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_400

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_399: 8767 - K06874 K06874 zinc finger protein, at 928294 to 930157 8767 mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930496 to 933710 8768 mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934317 to 936010 8769

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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930,429 + 0.1
930,568 - -0.1
930,689 - 0.9
930,711 + 1.7
930,727 + -0.4
930,882 - 8768 mRNA_400 0.12 -0.3
931,004 + 8768 mRNA_400 0.16 0.5
931,143 + 8768 mRNA_400 0.20 -0.3
931,149 + 8768 mRNA_400 0.20 0.9
931,439 - 8768 mRNA_400 0.29 1.9
931,766 + 8768 mRNA_400 0.40 1.5
931,904 + 8768 mRNA_400 0.44 1.4
932,131 - 8768 mRNA_400 0.51 1.5
932,323 - 8768 mRNA_400 0.57 0.9
932,585 - 8768 mRNA_400 0.65 0.4
933,604 - 0.5
933,650 - 3.4
934,046 - 0.5
934,195 + 1.9
934,239 - -0.4
934,255 + 1.2
934,364 - 2.8
934,374 + -1.3
934,380 - 0.3
934,384 + -1.4
934,502 - 8769 mRNA_401 0.11 0.2
934,530 + 8769 mRNA_401 0.13 0.7
934,539 - 8769 mRNA_401 0.13 -0.7
934,545 - 8769 mRNA_401 0.13 0.2