Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_379

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_378: 8746 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 879759 to 883039 8746 mRNA_379: 8747 - HMMPfam-Inositolphosphorylceramide synthase subunit Kei1-PF08552, at 883203 to 884818 8747 mRNA_380: 8748 - K15322 TSEN2 tRNA-splicing endonuclease subunit Sen2, at 884980 to 886576 8748

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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883,095 - 0.0
883,211 - 0.7
883,220 + 0.1
883,221 - 0.4
883,226 + -0.5
883,243 - -0.8
883,251 + -1.3
883,403 - 8747 mRNA_379 0.12 1.8
883,410 - 8747 mRNA_379 0.13 0.9
884,274 - 8747 mRNA_379 0.66 -0.8
884,590 - 8747 mRNA_379 0.86 0.9
884,852 - 0.4
884,894 + 3.1
884,915 + 0.5