Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_371

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859391 to 862171 8738 mRNA_371: 8739 - HMMPfam-Protein of unknown function (DUF2408)-PF10303, at 862374 to 864566 8739 mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864831 to 866823 8740

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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861,376 + 8738 mRNA_370 0.71 -0.0
861,801 - 8738 mRNA_370 0.87 1.1
861,806 - 8738 mRNA_370 0.87 -0.0
861,906 + 1.4
862,391 - 2.8
862,676 - 8739 mRNA_371 0.14 -0.6
862,771 - 8739 mRNA_371 0.18 -0.7
862,861 - 8739 mRNA_371 0.22 0.6
863,131 + 8739 mRNA_371 0.35 0.7
863,321 - 8739 mRNA_371 0.43 1.8
863,359 + 8739 mRNA_371 0.45 2.4
863,458 + 8739 mRNA_371 0.49 0.5
863,461 - 8739 mRNA_371 0.50 0.6
863,721 + 8739 mRNA_371 0.61 1.5
864,094 - 8739 mRNA_371 0.78 2.3
864,144 - 8739 mRNA_371 0.81 0.5
864,151 - 8739 mRNA_371 0.81 1.6
864,304 - 8739 mRNA_371 0.88 0.7
864,317 + 8739 mRNA_371 0.89 -0.3
864,327 + 8739 mRNA_371 0.89 1.3
864,449 - -0.3
864,571 + -1.4
864,592 - 1.5
864,617 - 0.8
864,644 + 0.6
864,743 - 0.7
865,059 + 8740 mRNA_372 0.11 0.6
865,185 - 8740 mRNA_372 0.18 -1.3
865,192 + 8740 mRNA_372 0.18 2.2
865,222 - 8740 mRNA_372 0.20 1.2
865,530 + 8740 mRNA_372 0.35 0.6