Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_368

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850981 to 853734 8735 mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853834 to 856786 8736 mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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853,299 + 8735 mRNA_367 0.84 1.3
853,611 - 3.1
854,038 + -1.6
854,069 + -1.5
854,183 - 8736 mRNA_368 0.12 -1.0
854,317 + 8736 mRNA_368 0.16 -0.1
854,802 + 8736 mRNA_368 0.33 3.5
854,809 + 8736 mRNA_368 0.33 -0.2
855,079 - 8736 mRNA_368 0.42 0.6
855,657 - 8736 mRNA_368 0.62 0.0
855,665 - 8736 mRNA_368 0.62 0.5
855,784 - 8736 mRNA_368 0.66 2.5
855,976 - 8736 mRNA_368 0.73 -0.3
855,985 + 8736 mRNA_368 0.73 -2.1
856,108 - 8736 mRNA_368 0.77 0.2
856,136 - 8736 mRNA_368 0.78 -1.0
856,522 - 0.2
856,539 + -0.3
856,548 - 0.9
856,554 + -2.0
856,668 - 0.7
856,695 - 1.4
856,775 + -0.8
856,798 - -1.2
856,823 + -1.1
856,823 + 0.6
856,827 + -1.1
856,854 + 0.0
856,954 + 1.0
856,954 + 2.1
856,972 - -0.6
856,977 + 0.5
856,988 + 3.1
856,992 + 0.5
856,992 - -1.3
857,010 - 0.3
857,017 - -0.2
857,029 + -0.2
857,053 - 2.9
857,055 - 0.5
857,072 + 0.8
857,075 - -0.2
857,115 - 1.6
857,131 + -0.5
857,165 + -0.3
857,165 + 0.8
857,170 - -0.5
857,367 + 2.5
857,391 + 0.1
857,683 + 8737 mRNA_369 0.24 2.0