Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_366

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_365: 8733 - K17945 TPM1_2 tropomyosin, fungi type, at 848017 to 848980 8733 mRNA_366: 8734 - HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833, at 849261 to 850411 8734 mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850981 to 853734 8735

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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849,294 + 1.7
850,015 - 8734 mRNA_366 0.66 0.6
850,162 - 8734 mRNA_366 0.78 -0.1
850,460 - 0.2
850,470 + 0.9
850,483 + -0.9
850,486 + 1.6
850,599 - 0.7
850,605 - 0.0
850,619 - -0.7
850,621 + 4.3
850,751 + 0.7
850,776 - 1.0
850,783 - 0.1
850,791 + 2.3
850,795 - -0.3
850,810 - 0.3
850,814 + 0.9
850,817 - 4.9
850,828 + -0.6
850,932 + -1.7
851,013 + 0.7
851,084 + 1.5
851,144 - 1.0
851,255 - 1.1