Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_359

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836164 to 837965 8726 mRNA_359: 8727 - BLAST minor histocompatibility antigen H13 [Kwoniella d..., at 838218 to 839816 8727 mRNA_360: 8728 - BLAST CBN-SNA-1 protein [Caenorhabditis brenneri], at 840166 to 840441 8728 mRNA_361: 8729 - Hypothetical Protein, at 840466 to 840977 8729

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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837,317 + 8726 mRNA_358 0.64 -1.0
837,599 - 8726 mRNA_358 0.80 0.6
837,609 + 8726 mRNA_358 0.80 0.2
837,899 - 0.3
838,049 - 2.5
838,075 + -0.9
838,186 - 0.5
838,231 + -0.0
838,327 + -0.4
838,338 + -0.1
838,341 - -0.4
838,349 + 0.8
838,633 - 8727 mRNA_359 0.26 -0.1
838,666 - 8727 mRNA_359 0.28 -1.4
838,752 - 8727 mRNA_359 0.33 -0.2
838,926 - 8727 mRNA_359 0.44 0.4
839,100 - 8727 mRNA_359 0.55 1.6
839,917 - 1.6
839,987 - 0.9
840,229 + 8728 mRNA_360 0.23 0.4
840,467 - -0.1
840,513 - 0.4
840,516 + -0.7