Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_346

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807833 to 810278 8713 mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810935 to 812073 8714 mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812263 to 813594 8715

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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810,286 + 1.0
810,289 - 0.0
810,290 - 0.4
810,292 + 0.3
810,313 + 0.1
810,328 - 0.6
810,410 - 1.4
810,436 - 0.9
810,452 + 0.9
810,460 + -0.1
810,461 + 1.3
810,598 - -0.4
810,603 + -1.1
810,614 + 2.4
810,746 - 0.1
810,893 - 1.5
810,900 - -0.7
810,903 + -0.5
811,779 - 8714 mRNA_346 0.74 1.3
811,936 + 8714 mRNA_346 0.88 -1.0
812,083 + -1.1
812,210 - 1.2
812,408 - 8715 mRNA_347 0.11 -0.2
812,431 + 8715 mRNA_347 0.13 1.6
812,504 - 8715 mRNA_347 0.18 -0.2
812,505 + 8715 mRNA_347 0.18 -0.5
812,507 + 8715 mRNA_347 0.18 1.3
812,524 - 8715 mRNA_347 0.20 2.7
812,532 + 8715 mRNA_347 0.20 -0.4
812,535 + 8715 mRNA_347 0.20 -1.4
812,917 - 8715 mRNA_347 0.49 2.1
812,959 - 8715 mRNA_347 0.52 0.3
812,966 + 8715 mRNA_347 0.53 0.1