Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_340

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_339: 8707 - K01693 hisB imidazoleglycerol-phosphate dehydratase, at 798617 to 799510 8707 mRNA_340: 8708 - KOG1271 Methyltransferases, at 799973 to 801137 8708 mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801326 to 802147 8709

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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799,536 + -0.5
799,555 - 0.1
799,569 - -0.2
799,575 + 0.9
799,705 - 0.1
799,719 - -1.3
799,861 - 0.5
799,867 - -1.8
800,012 - -0.1
800,012 - 0.8
800,292 + 8708 mRNA_340 0.27 0.9
800,329 - 8708 mRNA_340 0.31 1.3
800,348 + 8708 mRNA_340 0.32 1.4
800,571 + 8708 mRNA_340 0.51 0.1
800,602 - 8708 mRNA_340 0.54 0.8
800,888 - 8708 mRNA_340 0.79 0.0
800,917 + 8708 mRNA_340 0.81 0.2
801,030 - -1.0
801,032 - -0.2
801,036 + 0.4
801,175 - 1.3
801,180 - -0.2
801,182 + -0.2
801,186 - 1.8
801,202 + 0.3
801,323 + 0.0
801,356 + -0.7
801,379 + 0.3
801,467 - 8709 mRNA_341 0.17 1.1
801,477 - 8709 mRNA_341 0.18 0.3
801,478 + 8709 mRNA_341 0.18 0.2
801,479 + 8709 mRNA_341 0.19 0.1
801,483 - 8709 mRNA_341 0.19 2.5
801,631 - 8709 mRNA_341 0.37 2.9
801,679 - 8709 mRNA_341 0.43 0.7
801,684 - 8709 mRNA_341 0.44 0.0
801,788 - 8709 mRNA_341 0.56 0.4
801,803 + 8709 mRNA_341 0.58 -0.7
801,820 - 8709 mRNA_341 0.60 -0.9
802,107 - 1.3
802,107 - 0.4