Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_337

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_335: 8703 - BLAST LOC100145131 protein [Xenopus tropicalis], at 794212 to 794991 8703 mRNA_336: 8704 - BLAST AGAP003941-PA [Anopheles gambiae str. PEST], at 795455 to 795670 8704 mRNA_337: 8705 - HMMPfam-Glycosyl hydrolases family 17-PF00332,SUPERFAMILY--SSF51445, at 795968 to 797601 8705 mRNA_338: 8706 - Hypothetical Protein, at 798129 to 798620 8706

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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794,984 - -0.7
795,085 + -0.9
795,089 + 1.0
795,096 - 1.1
795,105 - 0.4
795,229 - 0.6
795,259 + 0.2
795,262 + 0.2
795,263 + -0.4
795,272 - 0.9
795,284 - -0.1
795,290 + 1.9
795,677 - 1.0
795,677 - 0.1
795,806 - -0.0
795,822 + -0.0
796,272 + 8705 mRNA_337 0.19 3.6
796,502 + 8705 mRNA_337 0.33 -0.4
796,620 - 8705 mRNA_337 0.40 1.8
796,630 + 8705 mRNA_337 0.41 2.1
796,963 + 8705 mRNA_337 0.61 2.3
796,970 - 8705 mRNA_337 0.61 0.4
797,099 - 8705 mRNA_337 0.69 0.0
797,105 + 8705 mRNA_337 0.70 0.2
797,388 - 8705 mRNA_337 0.87 2.0
797,538 + 0.5
797,561 + 1.2
797,652 - -1.1
797,690 - 0.7
797,985 - 0.2
798,133 + -0.9
798,138 - 0.5
798,270 + 8706 mRNA_338 0.29 -0.3
798,291 + 8706 mRNA_338 0.33 1.2
798,504 - 8706 mRNA_338 0.76 0.8