Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_329

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_328: 8696 - K02987 RP-S4e, RPS4 small subunit ribosomal protein S4e, at 779514 to 780910 8696 mRNA_329: 8697 - Hypothetical Protein, at 781118 to 782181 8697 mRNA_330: 8698 - KOG2018 Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis, at 782807 to 784581 8698

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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780,972 + 2.6
780,979 + 3.2
780,986 + 0.5
780,998 + 0.3
781,000 + 0.6
781,002 + -0.9
781,015 - 0.9
781,096 - -0.5
781,117 - 0.3
781,157 - 0.2
781,291 + 8697 mRNA_329 0.16 0.6
781,556 + 8697 mRNA_329 0.41 0.7
781,859 + 8697 mRNA_329 0.70 -1.4
781,862 - 8697 mRNA_329 0.70 0.1
781,882 - 8697 mRNA_329 0.72 0.2
781,889 - 8697 mRNA_329 0.72 1.6
781,895 + 8697 mRNA_329 0.73 1.1
782,005 - 8697 mRNA_329 0.83 0.4
782,169 - 1.6
782,312 + 0.1
782,578 - 1.4
782,644 + -0.8
782,780 + 1.2
782,925 - -1.4