Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_325

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767858 to 770027 8692 mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770334 to 776057 8693 mRNA_326: 8694 - K17983 SHE9 sensitive to high expression protein 9, mitochondrial, at 776267 to 777781 8694

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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770,322 + -1.0
770,330 - -1.9
770,456 + 1.1
770,920 + 8693 mRNA_325 0.10 -0.4
771,183 - 8693 mRNA_325 0.15 2.2
771,326 + 8693 mRNA_325 0.17 -1.2
771,331 + 8693 mRNA_325 0.17 1.4
771,504 - 8693 mRNA_325 0.20 -1.2
771,842 - 8693 mRNA_325 0.26 1.3
771,942 - 8693 mRNA_325 0.28 0.9
772,411 - 8693 mRNA_325 0.36 0.7
772,525 - 8693 mRNA_325 0.38 0.6
772,538 + 8693 mRNA_325 0.39 0.8
773,237 + 8693 mRNA_325 0.51 1.4
773,516 + 8693 mRNA_325 0.56 1.0
774,089 + 8693 mRNA_325 0.66 -0.6
774,267 + 8693 mRNA_325 0.69 -0.6
774,279 + 8693 mRNA_325 0.69 0.2
774,693 + 8693 mRNA_325 0.76 2.3
774,828 + 8693 mRNA_325 0.79 0.5
774,932 + 8693 mRNA_325 0.80 1.0
775,136 - 8693 mRNA_325 0.84 -0.1
775,261 - 8693 mRNA_325 0.86 -0.4
775,269 + 8693 mRNA_325 0.86 1.6
775,425 + 8693 mRNA_325 0.89 0.3
775,688 - -0.0
776,012 + 0.5
776,136 - 0.3
776,136 - 0.1
776,139 + 1.5
776,146 - 0.8
776,154 - 0.2
776,164 + -0.9
776,170 - 2.5
776,241 - 1.6
776,478 + 8694 mRNA_326 0.14 1.5
777,052 + 8694 mRNA_326 0.52 -1.3