Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_324

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_323: 8691 - Hypothetical Protein, at 766259 to 767210 8691 mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767858 to 770027 8692 mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770334 to 776057 8693

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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766,950 - 8691 mRNA_323 0.73 1.0
767,067 - 8691 mRNA_323 0.85 0.3
767,149 - 2.7
767,181 + 1.1
767,238 - -0.0
767,288 - 2.4
767,324 + 0.1
767,333 + 0.8
767,337 + -0.1
767,361 - -0.6
767,411 + 0.6
767,506 - 0.4
767,511 + 0.7
767,530 - -0.2
767,530 - -1.1
767,537 + -1.1
767,538 + -1.2
767,557 + 0.1
767,564 - -0.9
767,577 + 0.8
767,585 + 0.1
767,594 + 0.0
767,603 + -0.0
767,653 - 1.3
767,658 - 1.8
767,664 - 0.9
767,664 - -0.6
767,680 + -0.5
767,685 + 0.9
767,784 + 0.1
767,821 - -1.0
767,823 + -0.7
767,839 + 0.8
767,865 + 1.1
767,964 - 2.2
768,124 + 8692 mRNA_324 0.12 0.2
768,128 + 8692 mRNA_324 0.12 0.2
768,253 - 8692 mRNA_324 0.18 3.2
768,712 + 8692 mRNA_324 0.39 0.1
769,122 - 8692 mRNA_324 0.58 -0.7
770,322 + -1.0
770,330 - -1.9
770,456 + 1.1
770,920 + 8693 mRNA_325 0.10 -0.4