Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_300

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707483 to 708587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709223 to 712870 8668

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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708,303 + 8667 mRNA_299 0.74 0.2
708,490 - -0.9
708,731 - 0.7
708,734 - 0.0
708,734 + 1.6
709,004 + 3.1
709,028 + -1.1
709,138 - 0.3
709,159 - 0.2
709,180 + 3.0
709,188 - 0.4
709,215 + -0.2
709,243 - 0.6
709,317 - 2.4
709,342 + 0.6
709,443 - -0.2
709,474 - 0.7
709,502 + 1.1
709,626 - 8668 mRNA_300 0.11 0.5
709,631 - 8668 mRNA_300 0.11 0.7
709,916 - 8668 mRNA_300 0.19 -0.3
709,945 + 8668 mRNA_300 0.20 1.0
710,214 - 8668 mRNA_300 0.27 0.4
710,501 + 8668 mRNA_300 0.35 3.0
710,932 - 8668 mRNA_300 0.47 0.1
710,970 - 8668 mRNA_300 0.48 -0.7
711,209 + 8668 mRNA_300 0.54 2.3
711,592 - 8668 mRNA_300 0.65 -0.5
711,658 - 8668 mRNA_300 0.67 -1.0
712,422 + 8668 mRNA_300 0.88 3.7
712,561 - 0.5
713,004 - -1.9
713,107 - 0.3
713,250 - 0.3
713,278 + 1.6
713,283 + 0.0
713,404 + 1.5
713,417 - 0.1
713,418 - 0.6
713,422 + 1.0
713,423 - 1.6
713,443 + -0.9
713,443 + 1.8
713,447 + -0.1
713,477 - -1.0
713,483 - -0.2
713,490 + 1.8
713,529 + -0.6
713,533 + -1.6
713,537 - 2.0
713,544 - 3.4
713,545 - 0.1
713,547 + -0.2
713,550 + 0.8
713,556 - 0.2
713,563 + 1.1
713,566 - 1.7
713,576 - -0.6
713,581 + 0.3
713,698 - 0.2
713,715 + -0.3
713,716 + 0.4
713,720 - 0.9
713,868 + 1.3