Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_272

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646438 to 653784 8639 mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654316 to 655397 8640 mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655778 to 657591 8641

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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653,818 + 1.4
653,832 - -1.7
653,978 - 2.9
654,012 + 1.9
654,080 - 3.1
654,087 + -1.9
654,087 + -3.0
654,109 - -1.5
654,115 + -0.1
654,125 + 0.5
654,125 + 1.4
654,131 - -0.0
654,172 - -0.0
654,248 - -0.2
654,339 - 0.3
654,421 - -0.7
654,521 + 8640 mRNA_272 0.19 -0.9
654,550 - 8640 mRNA_272 0.22 0.3
654,863 - 8640 mRNA_272 0.51 -0.1
655,441 - 0.2
655,580 + 1.1
655,583 + -0.3
655,586 - -0.8
655,597 - -0.9
655,603 + 0.4
655,603 + 0.6
655,603 + 2.1
655,605 + -0.0
655,607 + 1.1
655,609 - 1.9
655,610 + -0.2
655,612 + -0.8
655,623 + 0.6
655,725 - 0.8
655,762 + 0.8
655,768 + 0.9
655,768 + 1.0
656,313 + 8641 mRNA_273 0.29 -0.2