Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_263

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628698 to 628997 8630 mRNA_263: 8631 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 629830 to 634837 8631

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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629,082 - 0.6
629,376 - 2.3
629,376 + 1.8
629,391 + 1.4
629,392 + -0.1
629,530 - 0.4
629,823 - 2.6
629,856 + 1.1
629,940 - -0.1
630,088 + 0.4
633,324 + 8631 mRNA_263 0.70 -0.1
634,033 + 8631 mRNA_263 0.84 0.2
634,048 - 8631 mRNA_263 0.84 1.2
634,056 + 8631 mRNA_263 0.84 0.1
634,160 - 8631 mRNA_263 0.86 0.3
634,160 + 8631 mRNA_263 0.86 2.2
634,165 - 8631 mRNA_263 0.87 -0.4
634,179 + 8631 mRNA_263 0.87 2.0
634,182 + 8631 mRNA_263 0.87 0.1
634,192 - 8631 mRNA_263 0.87 -0.2
634,264 - 8631 mRNA_263 0.89 0.2
634,374 + 2.7
634,400 - 1.7
634,621 + -0.5
634,656 + 0.1
634,759 - 1.3
634,766 + -0.4
634,783 + 0.0
634,787 - 0.4
634,917 + 1.4
634,917 + 1.8
634,918 - 0.7
634,920 - 0.3
634,927 - -0.7
634,929 + 0.0
634,930 - -0.7
634,933 - -0.1
634,933 + -1.0
634,936 - -0.6
634,940 + 0.7
634,940 - 0.7
634,941 - 0.5
634,941 + 0.5
634,943 - 1.1
634,943 - -1.0
634,947 - 0.2
634,947 + -0.4
634,952 + 0.5
634,952 + 0.3
634,955 - 1.9
634,955 - 0.3
634,960 - 0.0
634,964 + 2.0
634,965 - 0.4
634,966 + -0.2
634,968 + -0.1
634,975 - 2.5
634,987 + 1.2
634,990 + -0.6
634,998 - -0.5
635,047 - 0.5
635,056 + 0.9
635,169 + 2.7
635,179 + 0.8
635,185 - 0.2
635,193 - 0.8
635,204 + -1.1
635,209 + -0.0
635,211 + 1.6
635,325 - 0.7
635,329 - 1.4
635,362 - 1.6
635,772 - -1.0