Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_256

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_255: 8623 - K02320 POLA1 DNA polymerase alpha subunit A, at 613626 to 618274 8623 mRNA_256: 8624 - K11254 H4 histone H4, at 618548 to 619064 8624 mRNA_257: 8625 - KOG1745 Histones H3 and H4, at 619763 to 620480 8625

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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618,978 - 8624 mRNA_256 0.83 1.4
618,979 + 8624 mRNA_256 0.83 0.1
619,157 - 1.7
619,243 - 0.1
619,251 - 0.7
619,258 - 0.2
619,273 - 0.3
619,312 + -1.7
619,312 + 2.2
619,324 - -0.4
619,324 + 0.3
619,328 + 0.7
619,350 - 0.0
619,381 - 0.6
619,383 + -0.1
619,384 - -0.6
619,389 - 0.1
619,392 - -0.4
619,395 - 1.1
619,399 + 0.1
619,400 + 1.6
619,431 + 1.0
619,433 + 4.9
619,463 - 1.5
619,470 + 0.2
619,587 - 0.4
619,624 - -0.1
619,628 - 2.3
619,628 - -0.3
619,633 + 0.9
619,640 - 0.9
619,643 - -1.6
619,647 + 0.9
619,650 + 2.2
619,650 - 0.2
619,653 - 1.8
619,653 + 2.0
619,655 - 1.9
619,658 + 0.1
619,660 + 1.1
619,685 + -1.8
619,692 + 0.2
619,795 + -0.1
619,958 + 8625 mRNA_257 0.27 0.9