Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_251

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607313 to 608781 8618 mRNA_251: 8619 - HMMPfam-ACT domain-PF13840,PIRSF--PIRSF008459,SUPERFAMILY--SSF55021, at 608918 to 609439 8619 mRNA_252: 8620 - Hypothetical Protein, at 609608 to 610870 8620

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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608,001 - 8618 mRNA_250 0.47 0.1
608,030 - 8618 mRNA_250 0.49 1.9
608,059 + 8618 mRNA_250 0.51 -0.1
608,200 - 8618 mRNA_250 0.60 -0.2
608,209 + 8618 mRNA_250 0.61 -0.1
608,331 - 8618 mRNA_250 0.69 -0.4
608,627 - 8618 mRNA_250 0.89 0.9
608,633 + 8618 mRNA_250 0.90 0.2
608,925 + -1.0
609,181 - 8619 mRNA_251 0.50 0.8
609,190 + 8619 mRNA_251 0.52 -0.5
609,356 - 8619 mRNA_251 0.84 1.5
609,358 - 8619 mRNA_251 0.84 0.3
609,376 - 8619 mRNA_251 0.88 0.6
609,487 - 0.2
609,496 + -0.4
609,498 - 1.9
609,498 + 3.1
609,573 + -0.2
609,642 - 0.3
609,652 - 0.5
609,667 + 1.3
609,695 + 1.6
609,958 + 8620 mRNA_252 0.28 3.2
609,963 + 8620 mRNA_252 0.28 1.9
610,016 + 8620 mRNA_252 0.32 0.4
610,018 - 8620 mRNA_252 0.32 -0.6
610,292 - 8620 mRNA_252 0.54 -0.5