Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_250

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_249: 8617 - K03538 POP4, RPP29 ribonuclease P protein subunit POP4, at 605214 to 606480 8617 mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607313 to 608781 8618 mRNA_251: 8619 - HMMPfam-ACT domain-PF13840,PIRSF--PIRSF008459,SUPERFAMILY--SSF55021, at 608918 to 609439 8619 mRNA_252: 8620 - Hypothetical Protein, at 609608 to 610870 8620

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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606,614 + -0.3
606,728 - 0.3
606,751 + 2.1
606,833 + 1.1
606,854 + 0.8
606,860 + 0.7
606,877 + 0.5
606,919 - -0.2
607,038 + 0.3
607,177 + 2.0
607,186 + 1.7
607,199 - -0.1
607,479 + 8618 mRNA_250 0.11 -0.6
607,503 + 8618 mRNA_250 0.13 0.5
607,605 - 8618 mRNA_250 0.20 -0.7
607,775 - 8618 mRNA_250 0.31 -0.7
607,894 - 8618 mRNA_250 0.40 -0.2
607,906 - 8618 mRNA_250 0.40 1.7
607,914 - 8618 mRNA_250 0.41 -0.4
608,001 - 8618 mRNA_250 0.47 0.1
608,030 - 8618 mRNA_250 0.49 1.9
608,059 + 8618 mRNA_250 0.51 -0.1
608,200 - 8618 mRNA_250 0.60 -0.2
608,209 + 8618 mRNA_250 0.61 -0.1
608,331 - 8618 mRNA_250 0.69 -0.4
608,627 - 8618 mRNA_250 0.89 0.9
608,633 + 8618 mRNA_250 0.90 0.2
608,925 + -1.0
609,181 - 8619 mRNA_251 0.50 0.8
609,190 + 8619 mRNA_251 0.52 -0.5
609,356 - 8619 mRNA_251 0.84 1.5
609,358 - 8619 mRNA_251 0.84 0.3
609,376 - 8619 mRNA_251 0.88 0.6
609,487 - 0.2
609,496 + -0.4
609,498 - 1.9
609,498 + 3.1
609,573 + -0.2
609,642 - 0.3
609,652 - 0.5
609,667 + 1.3
609,695 + 1.6