Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_233

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_231: 8599 - HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371, at 569811 to 575068 8599 mRNA_232: 8600 - KOG1773 Stress responsive protein, at 575328 to 575800 8600 mRNA_233: 8601 - K06287 maf septum formation protein, at 575956 to 577138 8601 mRNA_234: 8602 - K00452 HAAO 3-hydroxyanthranilate 3,4-dioxygenase, at 577218 to 578179 8602

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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575,312 - 0.0
575,673 - 8600 mRNA_232 0.73 0.2
575,789 + 0.4
575,911 - -0.2
575,913 + 0.1
576,234 - 8601 mRNA_233 0.23 -1.2
576,244 + 8601 mRNA_233 0.24 1.0
576,244 - 8601 mRNA_233 0.24 1.0
577,257 + 0.9
577,379 + 8602 mRNA_234 0.17 -0.3
577,982 - 8602 mRNA_234 0.79 1.1
578,093 - -0.3