Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_228

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_227: 8595 - K03259 EIF4E translation initiation factor 4E, at 561039 to 562506 8595 mRNA_228: 8596 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 563158 to 565625 8596 mRNA_229: 8597 - Hypothetical Protein, at 565794 to 566303 8597

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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562,324 + 8595 mRNA_227 0.88 -0.6
562,325 + 8595 mRNA_227 0.88 -0.9
562,332 + 8595 mRNA_227 0.88 -0.1
562,431 + -0.5
562,463 + -0.4
562,604 - -0.2
562,624 + 2.0
562,625 - -1.1
562,626 + 0.4
562,631 + 1.5
562,766 - 0.2
562,915 - -0.2
562,915 + -1.6
562,925 - 0.5
562,926 - 0.2
562,926 + -0.9
562,934 + 0.8
562,939 + 0.9
562,967 + 0.2
563,006 - -0.7
563,007 + 1.6
563,008 - 2.2
563,024 + -2.5
563,025 - 0.1
563,025 + 0.6
563,030 - -0.0
563,034 - 1.4
563,047 + -1.4
563,048 + -0.1
563,055 + -0.3
563,068 - 0.3
563,071 + -0.6
563,072 - 1.9
563,074 + -0.2
563,085 - 1.2
563,087 + 0.2
563,087 + 2.2
563,099 - 0.4
563,114 + 1.1
563,190 + 0.7
563,203 - 0.7
563,206 + 1.9
563,207 + 1.0
563,211 - 0.5
563,213 - 2.5
563,213 + 1.4
563,218 + 0.7
563,222 + -0.1
563,226 - 1.1
563,227 + 1.0
563,260 - -1.4
563,361 - 0.3
563,362 + 0.4
563,515 + 8596 mRNA_228 0.14 0.7
563,661 - 8596 mRNA_228 0.20 0.4
564,269 + 8596 mRNA_228 0.45 -2.0
564,293 + 8596 mRNA_228 0.46 -0.1
564,518 - 8596 mRNA_228 0.55 0.4
564,532 + 8596 mRNA_228 0.56 -2.0
565,076 - 8596 mRNA_228 0.78 -1.2
565,098 + 8596 mRNA_228 0.79 0.1
565,242 + 8596 mRNA_228 0.84 1.2
565,259 - 8596 mRNA_228 0.85 -2.2
565,392 + -1.1
565,827 - -0.4
565,838 - 0.9
566,143 - 8597 mRNA_229 0.68 3.3
566,150 - 8597 mRNA_229 0.70 -0.2
566,579 - 0.2