Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_221

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_220: 8588 - K11159 K11159 carotenoid cleavage dioxygenase, at 542754 to 544832 8588 mRNA_221: 8589 - HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462, at 545315 to 547571 8589 mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547787 to 548767 8590

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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544,585 - 8588 mRNA_220 0.88 -0.4
544,586 + 8588 mRNA_220 0.88 1.5
544,624 - 8588 mRNA_220 0.90 0.5
544,746 - 0.1
545,045 - 1.3
545,046 - -0.2
545,060 - 0.3
545,071 - 0.2
545,079 + -2.2
545,081 + 0.0
545,082 - 0.3
545,106 + -0.0
545,134 - 3.1
545,182 - 1.4
545,225 - -0.1
545,225 + -1.9
545,231 - 1.9
545,240 + 0.5
545,257 + 0.1
545,380 - 0.5
545,381 + 0.2
545,668 + 8589 mRNA_221 0.16 -0.6
545,969 + 8589 mRNA_221 0.29 0.2
546,125 - 8589 mRNA_221 0.36 -0.2
546,128 - 8589 mRNA_221 0.36 1.8
546,133 - 8589 mRNA_221 0.36 1.3
546,141 + 8589 mRNA_221 0.37 -1.5
546,421 - 8589 mRNA_221 0.49 0.0
546,716 + 8589 mRNA_221 0.62 0.7
546,729 + 8589 mRNA_221 0.63 -0.6
546,849 - 8589 mRNA_221 0.68 -2.1
547,318 - 8589 mRNA_221 0.89 1.0
547,503 + 1.7
547,649 - -0.4