Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_212

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_211: 8579 - K00432 gpx glutathione peroxidase, at 519549 to 520466 8579 mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521112 to 523919 8580 mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524056 to 525912 8581

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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520,547 - -0.1
520,564 + -0.2
520,690 + -1.0
520,708 + 1.8
520,816 - -0.1
520,831 + 3.0
520,833 + 0.3
520,836 + 0.9
520,838 - 2.0
520,842 + 0.1
520,847 - 2.3
520,851 - 1.1
520,853 - 0.0
520,855 + 1.0
520,867 + 0.5
520,867 + 2.1
520,886 - 2.2
520,886 - -0.3
520,887 + 0.3
520,893 - -1.4
520,948 - 1.4
520,984 - 0.3
521,019 - 0.6
521,032 - -0.2
521,108 - -0.4
521,120 - -0.0
521,273 - 2.4
521,309 - -0.1
521,474 + 8580 mRNA_212 0.13 0.6
521,949 + 8580 mRNA_212 0.30 0.3
522,349 + 8580 mRNA_212 0.44 0.2
522,733 - 8580 mRNA_212 0.58 -0.5
522,821 - 8580 mRNA_212 0.61 0.1
522,863 + 8580 mRNA_212 0.62 0.2
522,965 - 8580 mRNA_212 0.66 -0.9
523,266 - 8580 mRNA_212 0.77 0.5
523,296 - 8580 mRNA_212 0.78 -0.8
523,386 - 8580 mRNA_212 0.81 -0.7
523,414 - 8580 mRNA_212 0.82 1.8
523,425 - 8580 mRNA_212 0.82 0.2
523,425 + 8580 mRNA_212 0.82 1.0
523,431 + 8580 mRNA_212 0.83 1.1
523,431 + 8580 mRNA_212 0.83 -0.3
523,469 + 8580 mRNA_212 0.84 -0.1
523,484 + 8580 mRNA_212 0.84 0.5
523,527 + 8580 mRNA_212 0.86 1.6
523,531 - 8580 mRNA_212 0.86 2.6
523,539 + 8580 mRNA_212 0.86 0.8
523,551 - 8580 mRNA_212 0.87 1.2
523,554 + 8580 mRNA_212 0.87 -0.9
523,562 + 8580 mRNA_212 0.87 1.0
523,568 + 8580 mRNA_212 0.87 -0.3
523,658 - 1.3
523,659 + 0.5
523,673 + -1.2
523,683 + 1.7
523,707 - -0.3
523,713 + 0.1
523,885 + 1.6
523,887 - 2.8
523,962 - 2.2
523,972 + -0.1
523,973 - 0.4
523,986 - 2.1
524,008 - 1.1
524,024 - 0.5
524,358 + 8581 mRNA_213 0.16 0.2
524,838 - 8581 mRNA_213 0.42 -0.2
524,848 + 8581 mRNA_213 0.43 0.5