Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_179

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_178: 8546 - K00974 cca tRNA nucleotidyltransferase (CCA-adding enzyme), at 435163 to 437748 8546 mRNA_179: 8547 - KOG2886 Uncharacterized conserved protein, at 437893 to 438740 8547 mRNA_180: 8548 - K01647 CS, gltA citrate synthase, at 438943 to 441127 8548

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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437,946 - 2.2
437,994 - 8547 mRNA_179 0.12 1.6
437,995 + 8547 mRNA_179 0.12 1.4
438,286 + 8547 mRNA_179 0.46 2.3
438,294 - 8547 mRNA_179 0.47 1.3
438,468 - 8547 mRNA_179 0.68 1.2
438,697 + -0.3
438,710 - 0.6
438,711 + 1.7
438,717 - -0.0
438,727 - 1.1
438,734 + -0.4
438,736 - 1.0
438,741 - 0.4
438,751 - -0.2
438,766 - 3.5
438,768 - -1.2
438,862 - -0.0
438,864 - 2.3
438,866 - 0.4
438,890 - 0.6
438,998 + 0.1
439,019 - 0.9
439,019 - -1.5
439,024 - -2.0
439,030 - 1.2
439,048 - 0.8
439,050 + 2.2
439,186 - 8548 mRNA_180 0.11 0.2
439,206 + 8548 mRNA_180 0.12 1.2
439,230 + 8548 mRNA_180 0.13 2.0
439,250 + 8548 mRNA_180 0.14 1.8
439,332 + 8548 mRNA_180 0.18 0.4
439,336 + 8548 mRNA_180 0.18 -0.3
439,503 + 8548 mRNA_180 0.26 -0.1
439,598 + 8548 mRNA_180 0.30 -1.6
439,642 - 8548 mRNA_180 0.32 -0.5
439,652 - 8548 mRNA_180 0.32 -0.1