Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_176

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429470 to 431854 8543 mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432530 to 433945 8544 mRNA_177: 8545 - KOG4096 Uncharacterized conserved protein, at 434117 to 434779 8545

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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431,611 + 8543 mRNA_175 0.90 -0.8
431,682 + -1.7
431,765 + 0.1
431,780 - -0.4
431,801 - -0.8
431,802 + 0.6
431,817 - -0.9
431,839 + -0.3
431,942 + 0.3
431,952 - -0.1
431,964 + 0.1
431,969 + -1.5
431,969 - 0.1
431,973 + 2.0
431,974 + -0.2
431,978 - -0.5
431,986 + 0.3
431,988 + -0.3
431,990 + 0.5
431,991 + 0.3
431,991 - 2.0
431,997 + -0.7
432,005 - 0.6
432,005 - 0.1
432,013 + -0.4
432,031 + 0.0
432,044 + 1.4
432,045 + -0.2
432,049 + 0.1
432,049 + 2.2
432,054 + 0.7
432,068 + 2.0
432,070 + -1.1
432,072 - -1.0
432,072 - -1.3
432,073 + 0.9
432,079 + 0.8
432,085 + 2.7
432,089 + -0.7
432,093 + 0.7
432,111 + -1.3
432,150 + 1.6
432,151 + 1.4
432,155 + 1.8
432,160 - -0.6
432,167 + 0.8
432,168 + 2.6
432,174 - 1.3
432,181 - -1.2
432,188 + 0.3
432,191 - -0.8
432,193 - -0.7
432,194 + 1.8
432,197 - -1.6
432,202 + 0.1
432,204 - -0.6
432,209 - 2.7
432,211 - 3.8
432,213 - -2.2
432,222 - 1.4
432,224 + 2.9
432,230 + 2.8
432,231 + 0.4
432,267 - 0.7
432,274 - 0.7
432,290 - -0.2
432,330 - -1.2
432,336 - 0.4
432,336 + 0.5
432,337 + -0.2
432,347 + 0.6
432,351 + -0.5
432,365 - 1.2
432,373 - 1.6
432,378 + 0.2
432,388 + -0.0
432,815 - 8544 mRNA_176 0.20 0.4
432,819 + 8544 mRNA_176 0.20 1.2
432,830 + 8544 mRNA_176 0.21 -1.6
432,839 - 8544 mRNA_176 0.22 1.5
433,126 - 8544 mRNA_176 0.42 1.5
434,612 + 8545 mRNA_177 0.75 -1.3
434,620 + 8545 mRNA_177 0.76 0.9
434,733 - -1.3
434,745 - 1.5
434,871 + 1.2
434,885 - 0.1
434,888 + 0.8