Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_170

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_169: 8537 - K14306 NUP62, NSP1 nuclear pore complex protein Nup62, at 415068 to 417360 8537 mRNA_170: 8538 - K12179 COPS6, CSN6 COP9 signalosome complex subunit 6, at 417604 to 419070 8538 mRNA_171: 8539 - K03237 EIF2S1 translation initiation factor 2 subunit 1, at 419232 to 420600 8539

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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417,757 + 8538 mRNA_170 0.10 0.5
417,782 - 8538 mRNA_170 0.12 -0.6
417,928 - 8538 mRNA_170 0.22 -0.1
418,086 + 8538 mRNA_170 0.33 -0.5
418,536 + 8538 mRNA_170 0.64 1.3
418,650 - 8538 mRNA_170 0.71 0.0
418,672 + 8538 mRNA_170 0.73 0.8
418,696 + 8538 mRNA_170 0.74 0.9
418,827 - 8538 mRNA_170 0.83 -0.1
418,837 + 8538 mRNA_170 0.84 -0.2
418,838 - 8538 mRNA_170 0.84 1.5
419,130 - 0.2
419,133 + -0.5