Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_164

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_163: 8531 - Hypothetical Protein, at 403276 to 404295 8531 mRNA_164: 8532 - Hypothetical Protein, at 404595 to 407143 8532 mRNA_165: 8533 - K12602 WDR61, REC14, SKI8 WD repeat-containing protein 61, at 407555 to 409013 8533

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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403,681 + 8531 mRNA_163 0.40 -1.1
403,868 + 8531 mRNA_163 0.58 0.9
403,941 - 8531 mRNA_163 0.65 1.1
403,988 - 8531 mRNA_163 0.70 1.9
404,253 + -1.0
404,422 - 1.4
404,437 + 1.9
404,441 + 0.6
404,558 + 0.5
404,576 + -0.3
405,261 - 8532 mRNA_164 0.26 -0.7
405,269 + 8532 mRNA_164 0.26 -0.7
405,367 + 8532 mRNA_164 0.30 0.3
405,574 + 8532 mRNA_164 0.38 -0.4
405,727 + 8532 mRNA_164 0.44 0.1
405,730 - 8532 mRNA_164 0.45 0.6
405,997 - 8532 mRNA_164 0.55 -0.8
405,999 - 8532 mRNA_164 0.55 1.5
406,000 + 8532 mRNA_164 0.55 1.2
406,001 - 8532 mRNA_164 0.55 1.3
406,001 + 8532 mRNA_164 0.55 0.6
406,002 - 8532 mRNA_164 0.55 1.1
406,022 - 8532 mRNA_164 0.56 1.9
406,026 + 8532 mRNA_164 0.56 -0.9
406,037 - 8532 mRNA_164 0.57 1.3
406,038 + 8532 mRNA_164 0.57 -0.1
406,183 + 8532 mRNA_164 0.62 2.7
406,324 + 8532 mRNA_164 0.68 -1.5
406,326 + 8532 mRNA_164 0.68 1.9
406,455 + 8532 mRNA_164 0.73 -0.8
406,457 + 8532 mRNA_164 0.73 -0.1
406,466 + 8532 mRNA_164 0.73 -0.9
406,468 - 8532 mRNA_164 0.73 -0.0
406,735 + 8532 mRNA_164 0.84 0.2
406,737 + 8532 mRNA_164 0.84 -0.7
406,887 - 8532 mRNA_164 0.90 0.7
407,039 - 0.9
407,178 + 1.3
407,180 + 1.7
407,188 - 0.4
407,490 - 0.0
407,505 - -1.7
407,516 + 0.5
407,652 + -1.1
407,800 + 8533 mRNA_165 0.17 2.5