Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_162

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_161: 8529 - KOG1727 Microtubule-binding protein (translationally controlled tumor protein), at 399773 to 400854 8529 mRNA_162: 8530 - BLAST NADH dehydrogenase [ubiquinone] 1 alpha subcomplex su..., at 401367 to 403016 8530 mRNA_163: 8531 - Hypothetical Protein, at 403276 to 404295 8531

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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400,978 - 1.9
400,978 - -0.6
400,999 - 0.4
401,000 - -1.0
401,014 + -0.1
401,024 - 0.5
401,028 + -1.2
401,032 - 0.0
401,040 - -0.6
401,040 - -0.4
401,047 - 0.3
401,056 + 2.6
401,056 + 0.0
401,058 + 2.5
401,058 + 1.1
401,153 + 0.5
401,188 + 1.6
401,188 - -0.3
401,202 - 0.4
401,214 + 0.4
401,338 - 1.7
401,361 + -0.9
401,385 + 2.0
401,500 + -0.1
401,512 - 1.1
401,514 + 2.3
401,611 - 8530 mRNA_162 0.15 2.3
401,635 + 8530 mRNA_162 0.16 0.8
401,935 - 8530 mRNA_162 0.34 2.2
402,758 + 8530 mRNA_162 0.84 -0.7
403,510 - 8531 mRNA_163 0.23 0.4
403,520 - 8531 mRNA_163 0.24 2.5
403,681 + 8531 mRNA_163 0.40 -1.1
403,868 + 8531 mRNA_163 0.58 0.9
403,941 - 8531 mRNA_163 0.65 1.1
403,988 - 8531 mRNA_163 0.70 1.9